Description Usage Arguments Details References
View source: R/validate.input.R
Ensure that an annotation has all of the required columns.
1 2 3 4 5 6 7 8 9 | validate.annot(
data,
annot,
annot.flags,
sample.id,
fill = "CPM",
baseline.flag = NULL,
baseline.val = NULL
)
|
data |
The input count data. |
annot |
The annotation dataframe. |
annot.flags |
The vector of annotation flags passed by the user. |
sample.id |
Sample id label to check if in annot. |
fill |
The fill value indicated by the user,"count" or "CPM". |
baseline.flag |
The baseline.flag passed by the user. |
baseline.val |
The baseline value passed by the user. |
The function will check the following:
The annot.flags
values are columns in annot
If fill
= "cfb": validate the baseline.flag
and
baseline.val
parameters.
sample.id
is a column in annot
.
Xingpeng Li, Tatiana Gelaf Romer & Siddhartha Pachhai RVA - RNAseq Visualization Automation tool.
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