transform.geneid: Transform GeneIDs

In RVA: RNAseq Visualization Automation

Description

This is the function to transform the input gene id type to another gene id type.

This is the function to transform the input gene id type to another gene id type.

Usage

## S3 method for class 'geneid'
transform(gene.names, from = ~gene.id.type, to = ~ct.table.id.type)

## S3 method for class 'geneid'
transform(gene.names, from = ~gene.id.type, to = ~ct.table.id.type)

Arguments

gene.names	Genes,in the format of character vector, to be transformed.
from	The gene id format of gene.names, should be one of: ACCNUM, ALIAS, ENSEMBL, ENSEMBLPROT, ENSEMBLTRANS, ENTREZID, ENZYME, EVIDENCE, EVIDENCEALL, GENENAME, GO, GOALL, IPI, MAP, OMIM, ONTOLOGY, ONTOLOGYALL, PATH, PFAM, PMID, PROSITE, REFSEQ, SYMBOL, UCSCKG, UNIGENE, UNIPROT.
to	The new gene id format should be one of: ACCNUM, ALIAS, ENSEMBL, ENSEMBLPROT, ENSEMBLTRANS, ENTREZID, ENZYME, EVIDENCE, EVIDENCEALL, GENENAME, GO, GOALL, IPI, MAP, OMIM, ONTOLOGY, ONTOLOGYALL, PATH, PFAM, PMID, PROSITE, REFSEQ, SYMBOL, UCSCKG, UNIGENE, UNIPROT.

RVA documentation built on Nov. 2, 2021, 1:06 a.m.