validate.pathways.db: Validate Pathways DB
In RVA: RNAseq Visualization Automation
Description
Usage
Arguments
References
View source: R/validate.input.R
Description
To ensure selected db name is correct.
Usage
1
validate.pathways.db(pathway.db, customized.pathways)
Arguments
pathway.db
The databse to be used for encrichment analysis. Can be one of the following, "rWikiPathways", "KEGG", "REACTOME", "Hallmark","rWikiPathways_aug_2020"
customized.pathways
the customized pathways in the format of two column dataframe (column name as "gs_name" and "entrez_gene") to be used in analysis
References
Xingpeng Li, Tatiana Gelaf Romer & Siddhartha Pachhai RVA - RNAseq Visualization Automation tool.
RVA documentation built on Nov. 2, 2021, 1:06 a.m.
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Description Usage Arguments References
View source: R/validate.input.R
Description
To ensure selected db name is correct.
Usage
1 | validate.pathways.db(pathway.db, customized.pathways)
|
Arguments
pathway.db |
The databse to be used for encrichment analysis. Can be one of the following, "rWikiPathways", "KEGG", "REACTOME", "Hallmark","rWikiPathways_aug_2020" |
customized.pathways |
the customized pathways in the format of two column dataframe (column name as "gs_name" and "entrez_gene") to be used in analysis |
References
Xingpeng Li, Tatiana Gelaf Romer & Siddhartha Pachhai RVA - RNAseq Visualization Automation tool.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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