| BBB_NMP_ad_subset | Example for "ad" format specification |
| BBB_NMP_GP_subset | Example for "gp" format specification |
| BBB_NMP_pl_subset | Example for "pl" format specification |
| BBB_PE_gt_subset | Example for "gt" format specification |
| BBB_samples | A file with names or IDs for ten samples. |
| cumhbd | Computes the realized inbreeding coefficient |
| cumkin | Computes the realized kinship |
| genoex | Subset of a dataset with genotypes for 20 sheeps |
| genosim | Example from a small simulated data set |
| hbd1 | The result of local IBD probabilities for a pair of... |
| hbd2 | The result of local IBD probabilities for a pair of... |
| kintaf_mix4l | The result of a kinship analysis on 18 cattle from the... |
| map1 | The map for local IBD probabilities for a pair of individuals... |
| merge_zres | Merge several zres objects generated by zoorun |
| predhbd | Extracts the IBD probabilities from the kres object |
| probhbd | Extracts the HBD probabilities from the zres object |
| rara_mix10l | The result of an analysis on 22 sheeps from Rasa Aragonesa... |
| realized | Extracts the realized autozygosity from the zres object |
| rohbd | Extracts the HBD segments from the zres object |
| RZooRoH-package | RZooRoH: Partitioning of Individual Autozygosity into... |
| soay_mix10l | The result of an analysis on 110 sheeps from the Soay... |
| typs | Subset of a dataset with genotypes for 6 individuals from a... |
| typsfrq | A file with marker allele frequencies for the cattle... |
| update_zres | Update one main zres object with new results |
| wilt_mix10l | The result of an analysis on 23 sheeps from Wiltshire... |
| zoodata | Read the genotype data file |
| zookin | Use the ZooRoH model to estimate kinship between pairs of... |
| zoomodel | Define the model for the RZooRoH |
| zooplot_hbdseg | Plot HBD segments identified with the ZooROH model |
| zooplot_individuals | Plot individual curves with proportion of the genome in each... |
| zooplot_partitioning | Plot the partitioning of the genome in different HBD classes... |
| zooplot_prophbd | Plot proportion of the genome associated with different HBD... |
| zoorun | Run the ZooRoH model |
