cumkin: Computes the realized kinship
In RZooRoH: Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes
View source: R/zookin_accessor.R
cumkin R Documentation
Computes the realized kinship
Description
Computes the realized kinship with respect to a base population by summing the
relatedness from all classes with a rate lower or equal to the threshold T.
This amounts to set the base population approximately 0.5*T generations ago.
Classes with a higher rate are then no longer considered as IBD.
Usage
cumkin(kres, T = NULL)
Arguments
kres
The name of the kres object created by the zoorun function.
T
The value chosen to define the base population. When T is not
provided, all classes are considered to estimate the kinship.
Value
An array with the computed kinship for all the pairs of individuals in
the analysis.
RZooRoH documentation built on June 8, 2025, 9:32 p.m.
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View source: R/zookin_accessor.R
| cumkin | R Documentation |
Computes the realized kinship
Description
Computes the realized kinship with respect to a base population by summing the relatedness from all classes with a rate lower or equal to the threshold T. This amounts to set the base population approximately 0.5*T generations ago. Classes with a higher rate are then no longer considered as IBD.
Usage
cumkin(kres, T = NULL)
Arguments
kres |
The name of the kres object created by the zoorun function. |
T |
The value chosen to define the base population. When T is not provided, all classes are considered to estimate the kinship. |
Value
An array with the computed kinship for all the pairs of individuals in the analysis.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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