BBB_NMP_ad_subset: Example for "ad" format specification

In RZooRoH: Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes

Example for "ad" format specification

Description

A dataset containing real allele depth information for 1,000 SNPs. The data is available for ten individuals and the first 1,000 SNPs on chromosome 1. The data corresponds to a low-fold sequencing experiment. There are two columns per individuals (read counts for allele 1 and for allele 2).

Usage

BBB_NMP_ad_subset

Format

A data frame with 1,000 rows and 25 variables:

chr

The chromosome number

marker_name

The marker id

pos

The position of the marker

allele1

The name of the first marker allele

allele2

The name of the second marker allele

id1_ad1

The read count for the first individual at the first markrer

id1_ad2

The read count for the first individual at the second markrer

id2_ad1

The read count for the second individual at the first markrer

id2_ad2

The read count for the second individual at the second markrer

id3_ad1, id3_ad2, id4_ad1, id4_ad2, id5_ad1, id5_ad2, id6_ad1, id6_ad2, id7_ad1, id7_ad2, id8_ad1, id8_ad2, id9_ad1, id9_ad2, id10_ad1, id10_ad2

The read counts for the other individuals

RZooRoH documentation built on Oct. 27, 2023, 9:07 a.m.