BBB_NMP_GP_subset: Example for "gp" format specification

BBB_NMP_GP_subsetR Documentation

Example for "gp" format specification

Description

A dataset containing real genotype probabilities for 1,000 SNPs. The data is available for ten individuals and 1,000 SNPs on chromosome 10. The data corresponds to a low-fold sequencing experiment. There are three columns per individuals (for genotypes 00, 01 and 11).

Usage

BBB_NMP_GP_subset

Format

A data frame with 1,000 rows and 35 variables:

chr

The chromosome number

marker_name

The marker id

pos

The position of the marker

allele1

The name of the first marker allele

allele2

The name of the second marker allele

id1_gp1

The AA genotype probability for the first individual

id1_gp2

The AB genotype probability for the first individual

id1_gp3

The BB genotype probability for the first individual

id2_gp1

The AA genotype probability for the second individual

id2_gp2

The AB genotype probability for the second individual

id2_gp3

The BB genotype probability for the second individual

id3_gp1, id3_gp2, id3_gp3, id4_gp1, id4_gp2, id4_gp3, id5_gp1, id5_gp2, id5_gp3, id6_gp1, id6_gp2, id6_gp3, id7_gp1, id7_gp2, id7_gp3, id8_gp1, id8_gp2, id8_gp3, id9_gp1, id9_gp2, id9_gp3, id10_gp1, id10_gp2, id10_gp3

The genotype probabilities for the other individuals


RZooRoH documentation built on Oct. 27, 2023, 9:07 a.m.