Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes

BBB_NMP_ad_subset | Example for "ad" format specification |

BBB_NMP_GP_subset | Example for "gp" format specification |

BBB_NMP_pl_subset | Example for "pl" format specification |

BBB_PE_gt_subset | Example for "gt" format specification |

BBB_samples | A file with names or IDs for ten samples. |

cumhbd | Computes the realized inbreeding coefficient |

genoex | Subset of a dataset with genotypes for 20 sheeps |

genosim | Example from a small simulated data set |

probhbd | Extracts the HBD probabilities from the zres object |

rara_mix10r | The result of an analysis on 22 sheeps from Rasa Aragonesa... |

realized | Extracts the realized autozygosity from the zres object |

rohbd | Extracts the HBD segments from the zres object |

RZooRoH | RZooRoH: A package for estimating global and local individual... |

soay_mix10r | The result of an analysis on 110 sheeps from the Soay... |

typs | Subset of a dataset with genotypes for 6 individuals from a... |

typsfrq | A file with marker allele frequencies for the cattle... |

wilt_mix10r | The result of an analysis on 23 sheeps from Wiltshire... |

zoodata | Read the genotype data file |

zoodoris | Returns number of HBD segments (or genome proportion) per... |

zoomodel | Define the model for the RZooRoH |

zooplot_hbdseg | Plot HBD segments identified with the ZooROH model |

zooplot_individuals | Plot individual curves with proportion of the genome in each... |

zooplot_partitioning | Plot the partitioning of the genome in different HBD classes... |

zooplot_prophbd | Plot proportion of the genome associated with different HBD... |

zoorun | Run the ZooRoH model |

zoosimd | Realizes a simulation using a zooroh data set and a zooroh... |

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