Man pages for RZooRoH
Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes

BBB_NMP_ad_subsetExample for "ad" format specification
BBB_NMP_GP_subsetExample for "gp" format specification
BBB_NMP_pl_subsetExample for "pl" format specification
BBB_PE_gt_subsetExample for "gt" format specification
BBB_samplesA file with names or IDs for ten samples.
cumhbdComputes the realized inbreeding coefficient
genoexSubset of a dataset with genotypes for 20 sheeps
genosimExample from a small simulated data set
probhbdExtracts the HBD probabilities from the zres object
rara_mix10rThe result of an analysis on 22 sheeps from Rasa Aragonesa...
realizedExtracts the realized autozygosity from the zres object
rohbdExtracts the HBD segments from the zres object
RZooRoHRZooRoH: A package for estimating global and local individual...
soay_mix10rThe result of an analysis on 110 sheeps from the Soay...
typsSubset of a dataset with genotypes for 6 individuals from a...
typsfrqA file with marker allele frequencies for the cattle...
wilt_mix10rThe result of an analysis on 23 sheeps from Wiltshire...
zoodataRead the genotype data file
zoodorisReturns number of HBD segments (or genome proportion) per...
zoomodelDefine the model for the RZooRoH
zooplot_hbdsegPlot HBD segments identified with the ZooROH model
zooplot_individualsPlot individual curves with proportion of the genome in each...
zooplot_partitioningPlot the partitioning of the genome in different HBD classes...
zooplot_prophbdPlot proportion of the genome associated with different HBD...
zoorunRun the ZooRoH model
RZooRoH documentation built on Nov. 15, 2018, 5:04 p.m.