Man pages for RZooRoH
Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes
| BBB_NMP_ad_subset | Example for "ad" format specification |
| BBB_NMP_GP_subset | Example for "gp" format specification |
| BBB_NMP_pl_subset | Example for "pl" format specification |
| BBB_PE_gt_subset | Example for "gt" format specification |
| BBB_samples | A file with names or IDs for ten samples. |
| cumhbd | Computes the realized inbreeding coefficient |
| genoex | Subset of a dataset with genotypes for 20 sheeps |
| genosim | Example from a small simulated data set |
| probhbd | Extracts the HBD probabilities from the zres object |
| rara_mix10r | The result of an analysis on 22 sheeps from Rasa Aragonesa... |
| realized | Extracts the realized autozygosity from the zres object |
| rohbd | Extracts the HBD segments from the zres object |
| RZooRoH | RZooRoH: A package for estimating global and local individual... |
| soay_mix10r | The result of an analysis on 110 sheeps from the Soay... |
| typs | Subset of a dataset with genotypes for 6 individuals from a... |
| typsfrq | A file with marker allele frequencies for the cattle... |
| wilt_mix10r | The result of an analysis on 23 sheeps from Wiltshire... |
| zoodata | Read the genotype data file |
| zoodoris | Returns number of HBD segments (or genome proportion) per... |
| zoomodel | Define the model for the RZooRoH |
| zooplot_hbdseg | Plot HBD segments identified with the ZooROH model |
| zooplot_individuals | Plot individual curves with proportion of the genome in each... |
| zooplot_partitioning | Plot the partitioning of the genome in different HBD classes... |
| zooplot_prophbd | Plot proportion of the genome associated with different HBD... |
| zoorun | Run the ZooRoH model |
| zoosimd | Realizes a simulation using a zooroh data set and a zooroh... |
