realized: Extracts the realized autozygosity from the zres object

In RZooRoH: Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes

Extracts the realized autozygosity from the zres object

Description

Extracts the realized autozygosity from the zres object. Extraction is performed for the indicated classes (all by default) and names are added to the columns. The function must be used with more than one individual is the zres object.

Usage

realized(zres, classNum = NULL)

Arguments

zres	The name of the zres object created by the zoorun function.
classNum	An array with the number of the classes to extract. All classes are extracted by default.

Value

The function returns a data frame with one row per individual and one column per extracted classes. In addition, it gives names to the columns. For a pre-defined model, the names of HBD classes are "R_X" where X is the rate of the corresponding class. For a model with rate estimation, the names of the HBD classes are "HBDclassX" where X is the number of the HBD class. For non-HBD classes, we use "NonHBD".

RZooRoH documentation built on Oct. 27, 2023, 9:07 a.m.