API for Ravages
Rare Variant Analysis and Genetic Simulations
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| CAST | Man page Source code |
| CAST.theoretical | Source code |
| GRR.matrix | Man page Source code |
| Gamma.mat | Source code |
| GnomADgenes | Man page |
| Jaccard | Man page Source code |
| Kryukov | Man page |
| LCT.hap | Man page |
| LCT.haplotypes | Man page |
| LCT.matrix | Man page |
| LCT.matrix.bed | Man page |
| LCT.matrix.fam | Man page |
| LCT.matrix.pop1000G | Man page |
| LCT.sample | Man page |
| LCT.snps | Man page |
| Liu.sitA | Source code |
| Liu.sitB | Source code |
| NullObject.parameters | Man page Source code |
| P.mat | Source code |
| P.mat2 | Source code |
| Pi.matrix | Source code |
| RAVA.FIRST | Man page Source code |
| SKAT | Man page Source code |
| SKAT.NullObject | Source code |
| SKAT.NullObject.continuous | Source code |
| SKAT.bootstrap | Man page Source code |
| SKAT.continuous | Man page Source code |
| SKAT.permutations | Man page Source code |
| SKAT.theoretical | Man page Source code |
| SKAT.theoretical1 | Source code |
| Sum.Fst | Source code |
| Sum.Fst.higher.perms | Source code |
| Sum.Fst1 | Source code |
| Sum.Fst1.higher.perms | Source code |
| W.mat | Source code |
| WSS | Man page Source code |
| adjustedCADD.annotation | Man page Source code |
| adjustedCADD.annotation.SNVs | Man page Source code |
| adjustedCADD.annotation.indels | Man page Source code |
| bed.matrix.split.genomic.region | Man page Source code |
| block.diag | Source code |
| burden | Man page Source code |
| burden.NullObject | Source code |
| burden.NullObject.continuous | Source code |
| burden.continuous | Man page Source code |
| burden.continuous.subscores | Man page Source code |
| burden.mlogit | Man page Source code |
| burden.mlogit.subscores | Man page Source code |
| burden.subscores | Man page Source code |
| burden.weighted.matrix | Man page Source code |
| filter.adjustedCADD | Man page Source code |
| filter.rare.variants | Man page Source code |
| genes.b37 | Man page |
| genes.b38 | Man page |
| genes.positions | Man page |
| genotypic.freq | Man page Source code |
| get.causal.burden | Source code |
| get.parameters.pvalue.continuous | Source code |
| get.parameters.pvalue.theoretical | Source code |
| get.rbm.thresholds | Source code |
| multinomial.asso.freq | Man page Source code |
| new.bed.matrix | Source code |
| p.case | Source code |
| p.tem.GRR | Source code |
| p.valeur.moments.liu | Source code |
| r_check_limit_cores | Source code |
| rbm.GRR | Man page Source code |
| rbm.GRR.power | Man page Source code |
| rbm.haplos.freqs | Man page Source code |
| rbm.haplos.power | Man page Source code |
| rbm.haplos.thresholds | Man page Source code |
| run.burden.continuous | Source code |
| run.burden.continuous.subscores | Source code |
| set.CADDregions | Man page Source code |
| set.genomic.region | Man page Source code |
| set.genomic.region.subregion | Man page Source code |
| simus.parameters | Source code |
| subregions.LCT | Man page |
