Files in Ravages
Rare Variant Analysis and Genetic Simulations

MD5
NEWS
NAMESPACE
DESCRIPTION
TODO
R/SKAT_continuous.r R/rbm_GRR_power.r R/or_matrix_fix.r R/filter_adjustedCADD.r R/SKAT_theoretical.r R/genotypic.freq.r R/adjustedCADD_annotation.r R/SKAT_bootstrap.r R/set_genomic_region.r R/set_genomic_region_subregion.r R/filter_rare_variants.r R/random_bed_matrix_haplo.r R/set_CADDregions.r R/burden_mlogit_subscores.r R/p_valeur_moments_liu.r R/RAVA_FIRST.r R/matrix_products.r R/bed_matrix_split_genomic_region.r R/burden_continuous_subscores.r R/SKAT.r R/GRR_matrix.r R/rbm_GRR.r R/get_parameters_pvalue_theoretical.r R/or_matrix_fix_same_variant.r R/zzz.r R/jaccard.r R/SKAT_permutations.r R/get_rbm_thresholds.r R/rbm_haplos_power.r R/burden_subscores.r R/NullObject_parameters.r R/burden_NullObject.r R/burden.r R/new_bed_matrix.r R/CAST.r R/sum_fst.r R/burden_mlogit.r R/Pi_matrix.r R/SKAT_NullObject.r R/burden_continuous.r R/random_bed_matrix_freqs.r R/globals.R R/WSS.r R/burden_weighted_matrix.r
src/skat.cpp
src/Makevars.win
src/Makevars
src/colsums.cpp
src/sum_fst.cpp
src/allelecounter.h
src/alleles_by_group.cpp
src/allelecounter2.h
src/statistics_class.h
src/sum_by_group.cpp
src/allelecounter.cpp
src/rbm_haplos_thresholds_filling.cpp
src/random_bed_matrix.cpp
src/m4_stats.cpp
src/count_alternative_alleles.cpp
src/block_diag.cpp
src/polytomic_haplotype_proba.h
src/weighted_left_product.h
src/matrix4.cpp
src/itere_combinaisons.h
src/burden.cpp
src/itere_combinaisons.cpp
src/weighted_left_product.cpp
src/label_multiple_genes.cpp
src/jaccard.cpp
src/rbm_haplos_thresholds.cpp
src/label_genes.cpp
src/ravages_init.c
src/skatBootstrap.cpp
src/rbm_haplos_freqs.cpp
src/moments.cpp
src/sum_fst1.cpp
src/allelecounter2.cpp
inst/doc/Ravages_Simulations_vignette.R
inst/doc/Ravages_Simulations_vignette.html
inst/doc/Ravages_vignette.html
inst/doc/Ravages_vignette.Rmd inst/doc/Ravages_Simulations_vignette.Rmd inst/doc/Ravages_vignette.R
build/vignette.rds
vignettes/Ravages_vignette.Rmd vignettes/Ravages_Simulations_vignette.Rmd
data/datalist
data/GnomADgenes.RData
data/Kryukov.rda
data/LCT.matrix.rda
data/LCT.haplotypes.rda
data/genes.b37.RData
data/genes.b38.RData
data/Subregions_LCT_example.RData
man/burden.continuous.subscores.Rd man/rbm.haplos.power.Rd man/Kryukov.Rd man/burden.mlogit.Rd man/burden.weighted.matrix.Rd man/rbm.GRR.power.Rd man/SKAT.permutations.Rd man/SKAT.theoretical.Rd man/burden.mlogit.subscores.Rd man/LCT.matrix.Rd man/NullObject.parameters.Rd man/LCT.haplotypes.Rd man/WSS.Rd man/burden.subscores.Rd man/filter_adjustedCADD.Rd man/genes.positions.Rd man/burden.continuous.Rd man/filter.rare.variants.Rd man/SKAT.continuous.Rd man/rbm.haplos.freqs.Rd man/Jaccard.Rd man/rbm.haplos.thresholds.Rd man/GnomADgenes.Rd man/RAVA_FIRST.Rd man/CAST.Rd man/adjustedCADD_annotation.Rd man/set.genomic.region.Rd man/GRR.matrix.Rd man/bed.matrix.split.genomic.region.Rd man/genotypic.freq.Rd man/set.genomic.region.subregion.Rd man/SKAT.Rd man/burden.Rd man/rbm.GRR.Rd man/set.CADDregions.Rd man/subregions.LCT.Rd man/SKAT.bootstrap.Rd
Ravages documentation built on Oct. 19, 2021, 5:07 p.m.