Files in Ravages

Rare Variant Analysis and Genetic Simulations

MD5

NEWS

NAMESPACE

DESCRIPTION

TODO

R/SKAT_continuous.r R/rbm_GRR_power.r R/or_matrix_fix.r R/filter_adjustedCADD.r R/SKAT_theoretical.r R/genotypic.freq.r R/adjustedCADD_annotation.r R/SKAT_bootstrap.r R/set_genomic_region.r R/set_genomic_region_subregion.r R/filter_rare_variants.r R/random_bed_matrix_haplo.r R/set_CADDregions.r R/adjustedCADD_annotation_SNVs.r R/burden_mlogit_subscores.r R/p_valeur_moments_liu.r R/RAVA_FIRST.r R/matrix_products.r R/bed_matrix_split_genomic_region.r R/burden_continuous_subscores.r R/SKAT.r R/GRR_matrix.r R/rbm_GRR.r R/get_parameters_pvalue_theoretical.r R/or_matrix_fix_same_variant.r R/zzz.r R/jaccard.r R/adjustedCADD_annotation_indels.r R/SKAT_permutations.r R/get_rbm_thresholds.r R/rbm_haplos_power.r R/burden_subscores.r R/NullObject_parameters.r R/burden_NullObject.r R/burden.r R/multinomial.asso.freq.r R/new_bed_matrix.r R/CAST.r R/sum_fst.r R/burden_mlogit.r R/SKAT_theoretical1.r R/Pi_matrix.r R/SKAT_NullObject.r R/burden_continuous.r R/random_bed_matrix_freqs.r R/globals.R R/WSS.r R/burden_weighted_matrix.r

src/skat.cpp

src/Makevars.win

src/Makevars

src/colsums.cpp

src/sum_fst.cpp

src/skatStats.cpp

src/allelecounter.h

src/weighted_left_product2.cpp

src/alleles_by_group.cpp

src/weightedGenotypes.h

src/allelecounter2.h

src/statistics_class.h

src/sum_by_group.cpp

src/allelecounter.cpp

src/rbm_haplos_thresholds_filling.cpp

src/skatMoments.cpp

src/random_bed_matrix.cpp

src/m4_stats.cpp

src/weightedGenotypes.cpp

src/count_alternative_alleles.cpp

src/block_diag.cpp

src/polytomic_haplotype_proba.h

src/GPG.cpp

src/weighted_left_product.h

src/matrix4.cpp

src/itere_combinaisons.h

src/burden.cpp

src/itere_combinaisons.cpp

src/weighted_left_product.cpp

src/GPG2.cpp

src/label_multiple_genes.cpp

src/jaccard.cpp

src/GPG.h

src/rbm_haplos_thresholds.cpp

src/label_genes.cpp

src/ravages_init.c

src/skatBootstrap.cpp

src/rbm_haplos_freqs.cpp

src/moments.cpp

src/sum_fst1.cpp

src/allelecounter2.cpp

inst/doc/Ravages_Simulations_vignette.R inst/doc/Ravages_vignette.Rmd inst/doc/Ravages_Simulations_vignette.Rmd inst/doc/Ravages_Simulations_vignette.pdf inst/doc/Ravages_vignette.pdf inst/doc/Ravages_vignette.R

build/vignette.rds

vignettes/Ravages_vignette.Rmd vignettes/Ravages_Simulations_vignette.Rmd

data/datalist

data/GnomADgenes.RData

data/Kryukov.rda

data/LCT.matrix.rda

data/LCT.haplotypes.rda

data/genes.b37.RData

data/genes.b38.RData

data/Subregions_LCT_example.RData

man/burden.continuous.subscores.Rd man/rbm.haplos.power.Rd man/Kryukov.Rd man/burden.mlogit.Rd man/burden.weighted.matrix.Rd man/rbm.GRR.power.Rd man/SKAT.permutations.Rd man/SKAT.theoretical.Rd man/burden.mlogit.subscores.Rd man/LCT.matrix.Rd man/NullObject.parameters.Rd man/adjustedCADD_annotation_indels.Rd man/LCT.haplotypes.Rd man/WSS.Rd man/burden.subscores.Rd man/filter_adjustedCADD.Rd man/genes.positions.Rd man/burden.continuous.Rd man/filter.rare.variants.Rd man/SKAT.continuous.Rd man/rbm.haplos.freqs.Rd man/Jaccard.Rd man/rbm.haplos.thresholds.Rd man/GnomADgenes.Rd man/RAVA_FIRST.Rd man/CAST.Rd man/adjustedCADD_annotation.Rd man/set.genomic.region.Rd man/GRR.matrix.Rd man/adjustedCADD_annotation_SNVs.Rd man/bed.matrix.split.genomic.region.Rd man/genotypic.freq.Rd man/set.genomic.region.subregion.Rd man/multinomial.asso.freq.Rd man/SKAT.Rd man/burden.Rd man/rbm.GRR.Rd man/set.CADDregions.Rd man/subregions.LCT.Rd man/SKAT.bootstrap.Rd

Ravages documentation built on April 1, 2023, 12:08 a.m.