LCT.haplotypes: LCT haplotypes data set

In Ravages: Rare Variant Analysis and Genetic Simulations

LCT haplotypes data set

Description

These data contain the haplotype matrix LCT.hap (5008 haplotypes) of the 2004 individuals from the 1000 Genomes data for a ~300kb segment containing the Lactase gene. Information about individuals (sex, population and super population) is present in LCT.sample, and information about snps is available in LCT.snps.

Usage

 data(LCT.haplotypes) 

Format

Three data objects are present in LCT.haplotypes:

LCT.hap

A matrix of haplotypes

LCT.sample

A data frame with information on individuals (sex, population, super.population)

LCT.snps

A data frame with information on snps (chr, id, dist, pos, A1, A2)

Source

Data were obtained from the 1000 Genomes Project.

References

McVean et al, 2012, An integrated map of genetic variation from 1,092 human genomes, Nature 491, 56-65 doi:10.1038/nature11632

See Also

LCT.matrix

Ravages documentation built on April 1, 2023, 12:08 a.m.