RbioRXN: Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data

To facilitate retrieving and processing biochemical reaction data such as Rhea, MetaCyc, KEGG and Unipathway, the package provides the functions to download and parse data, instantiate generic reaction and check mass-balance. The package aims to construct an integrated metabolic network and genome-scale metabolic model.

Install the latest version of this package by entering the following in R:
install.packages("RbioRXN")
AuthorByoungnam Min, Byeonghyeok Park, Kyoung Heon Kim and In-Geol Choi
Date of publication2015-05-19 13:07:25
MaintainerByoungnam Min <mbnmbn00@gmail.com>
LicenseGPL (>= 2)
Version1.5.1

View on CRAN

Functions

build.subtable Man page
check.mass.balance Man page
get.chebi.all Man page
get.kegg.all Man page
get.kegg.byId Man page
get.metacyc.all Man page
get.metacyc.reaction.byId Man page
get.rhea.all Man page
get.rhea.byCompound Man page
get.rhea.byId Man page
get.unipathway.all Man page
instantiate.metacyc Man page
instantiate.rhea Man page
is.generic.metacyc Man page
is.generic.rhea Man page
parse.metacyc.compound Man page
parse.metacyc.reaction Man page
RbioRXN Man page
RbioRXN-package Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.