get.rhea.byCompound: Download Rhea reaction by compound
In RbioRXN: Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data

Download and parse Rhea database with given keyword

1	get.rhea.byCompound(rheaCompound)

rheaCompound

e.g., caffeine

data.frame() object where data fields include

`rheaId`	Rhea ID
`reactionType`	BiochemicalReaction or transportReaction
`equationWithCommonName`	Textual reaction equation (compound standard names)
`sameParticipant`	Reactions with same reactants and products, but different directionalities
`mapped`
`formuled`
`polymerization`
`chemicallyBalanced`
`status`
`transport`
`direction`
`classOfReactions`	At least one reaction participant is class compound described in ChEBI
`equationWithChebi`	Reaction equation with ChEBI
`equationParticipant`
`crossLinks`	if reaction has cross-link to other databases, new columns are generated such as "MetaCyc", "KEGG" etc

Byoungnam Min <mbnmbn00@gmail.com>, Byeonghyuk Park, Kyoung Heon Kim and In-Geol Choi

Rhea database: http://www.ebi.ac.uk/rhea/home.xhtml

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# Not run:

##  get.rhea.byCompound("caffeine")

RbioRXN documentation built on May 29, 2017, 10:56 a.m.

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