get.rhea.byCompound: Download Rhea reaction by compound

Description Usage Arguments Value Author(s) References Examples

View source: R/get.rhea.byCompound.R

Description

Download and parse Rhea database with given keyword

Usage

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get.rhea.byCompound(rheaCompound)

Arguments

rheaCompound

e.g., caffeine

Value

data.frame() object where data fields include

rheaId

Rhea ID

reactionType

BiochemicalReaction or transportReaction

equationWithCommonName

Textual reaction equation (compound standard names)

sameParticipant

Reactions with same reactants and products, but different directionalities

mapped
formuled
polymerization
chemicallyBalanced
status
transport
direction
classOfReactions

At least one reaction participant is class compound described in ChEBI

equationWithChebi

Reaction equation with ChEBI

equationParticipant
crossLinks

if reaction has cross-link to other databases, new columns are generated such as "MetaCyc", "KEGG" etc

Author(s)

Byoungnam Min <[email protected]>, Byeonghyuk Park, Kyoung Heon Kim and In-Geol Choi

References

Rhea database: http://www.ebi.ac.uk/rhea/home.xhtml

Examples

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# Not run:

##  get.rhea.byCompound("caffeine")

RbioRXN documentation built on May 29, 2017, 10:56 a.m.