is.generic.metacyc: Check given reaction is generic reaction
In RbioRXN: Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data

Description Usage Arguments Value Author(s) References Examples

Generic reaction is a reaction with at least one compound class as reaction participant (e.g., a primary alcohol + NADP -> an aldehyde + H(+) + NADPH). This function check if given reaction is generic reaction

1	is.generic.metacyc(equation,compound_df,id_col,smiles_col,parent_col,direction_type)

`equation`	Reaction equation usually from get.metacyc.all() function.
`compound_df`	Chemial table (data.frame) containing SMILES code of each compound in reaction equation
`id_col`	In chemical table, choose the column name which contains chemical id (usually first column)
`smiles_col`	In chemical table, choose the column name which contains SMILES code
`parent_col`	In chemical table, choose the column name which contains TYPES
`direction_type`	In reaction equation, provide reaction direction charaters. Default is c(" <=> ", " => ")

Logical TRUE/FALSE

Byoungnam Min <mbnmbn00@gmail.com>, Byeonghyuk Park, Kyoung Heon Kim and In-Geol Choi

MetaCyc: http://metacyc.org

data(example) # Load sample data

metacyc.c = example$metacyc.c
metacyc.r.1 = example$metacyc_generic$equation
metacyc.r.2 = example$metacyc_massbal
metacyc.r = c(metacyc.r.1, metacyc.r.2)

names(metacyc.c) # Print column names

# Check generic reaction
is.generic.metacyc(metacyc.r,metacyc.c,'UNIQUE.ID','SMILES','TYPES',c(' <=> ', ' => '))