Description Usage Value Author(s) References Examples
Download current Rhea in BioPAX level 2 and parse to generate data.frame() object
1 |
data.frame() object where data fields include
rheaId |
Rhea ID |
reactionType |
BiochemicalReaction or transportReaction |
equationWithCommonName |
Textual reaction equation (compound standard names) |
sameParticipant |
Reactions with the same reactants and products, but different directionalities |
mapped |
|
formuled |
|
polymerization |
|
chemicallyBalanced |
|
status |
|
transport |
|
direction |
|
classOfReactions |
At least one reaction participant is class compound described in ChEBI |
equationWithChebi |
Reaction equation with ChEBI |
equationParticipant |
|
crossLinks |
If reaction has cross-link to other databases, new columns are generated such as "MetaCyc", "KEGG" etc |
Byoungnam Min <mbnmbn00@gmail.com>, Byeonghyuk Park, Kyoung Heon Kim and In-Geol Choi
Rhea database: http://www.ebi.ac.uk/rhea/home.xhtml
1 2 3 4 5 | # Not run: it takes about 20 minutes
## rhea = get.rhea.all()
## dim(rhea) # The number of downloaded reactions
## head(rhea)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.