get.rhea.all: Download current Rhea in data.frame() object
In RbioRXN: Process Rhea, KEGG, MetaCyc, Unipathway Biochemical Reaction Data

Download current Rhea in BioPAX level 2 and parse to generate data.frame() object

1	get.rhea.all()

data.frame() object where data fields include

`rheaId`	Rhea ID
`reactionType`	BiochemicalReaction or transportReaction
`equationWithCommonName`	Textual reaction equation (compound standard names)
`sameParticipant`	Reactions with the same reactants and products, but different directionalities
`mapped`
`formuled`
`polymerization`
`chemicallyBalanced`
`status`
`transport`
`direction`
`classOfReactions`	At least one reaction participant is class compound described in ChEBI
`equationWithChebi`	Reaction equation with ChEBI
`equationParticipant`
`crossLinks`	If reaction has cross-link to other databases, new columns are generated such as "MetaCyc", "KEGG" etc

Byoungnam Min <mbnmbn00@gmail.com>, Byeonghyuk Park, Kyoung Heon Kim and In-Geol Choi

Rhea database: http://www.ebi.ac.uk/rhea/home.xhtml

# Not run: it takes about 20 minutes

##  rhea = get.rhea.all()
##  dim(rhea)              # The number of downloaded reactions
##  head(rhea)

RbioRXN documentation built on May 29, 2017, 10:56 a.m.

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