Glossary for DoE terminology as used in RcmdrPlugin.DoE
Description
This glossary is intended for users who have heard about the concepts of experimental design, orthogonality, and so forth but would nevertheless like to look up some of the terminology.
It can of course not replace a good training or a good book on experimental design.
Glossary
 star

A
*
indicates a paragraph or section, that requires more statistical understanding than necessary for successful application of experimentation and can be skipped by readers who do not want to go in too deeply. Do not confuse with resolution III*.  2fi

short for 2factor interaction: The effect of a factor depends on the level of a second factor, e.g. in a sled test example reported in Grove and Davis, 1992 (p.25 f.), speed of airbag inflation shows almost no effect on chest acceleration for the smaller airbag in the experiment, while a higher speed strongly decreases chest acceleration for the larger air bag. One can also look at this example the other way round: For high speed, increasing the airbag size reduces chest acceleration, while for low speed, increasing the airbag size increases chest acceleration.
 2level fractional factorial

A 2level array is a rowbycolumn table, each column of which contains two distinct values only. A “2level orthogonal array” is a 2level array with particular balance properties: If for each column, one value is denoted by 1 and the other by +1, the element wise product of any pair of two columns always sums to 0. This provides an easy means of checking for orthogonality of any 2level array. Balance of the example plan can be expressed verbally as follows: Each possible level combination of two factors in the plan occurs equally often, e.g. short float rod/small tank, long float rod/small tank, short float rod/large tank, long float rod/large tank each occur twice. A “regular 2level fractional factorial” is a special 2level orthogonal array, for which all effects are either fully aliased or not aliased at all (no partial aliasing). A “nonregular 2level fractional factorial” is a 2level orthogonal array, for which partial aliasing occurs.
 aberration

*
Roughly, aberration is a criterion for comparing two designs of the same resolution: the design is better if aberration is smaller. Aberration measures the extent of the most severe aliasing: The larger the aberration, the more aliasing of the most severe type (resolution III: main effect with 2fi, resolution IV: 2fi with 2fi (and main effect with 3factor interaction, not listed in tables of CATALOGUE.XLS)) is present in the design. Technically, aberration is the number of shortest words.  active effect

An effect is said to be “active”, if it does have an influence on the response, and inactive otherwise.
 aliasing

Two effects are said to be completely aliased, if they cannot be seperated from each other by the design. An extreme example would be running an experiment on tires such that large tires of material 1 are compared to small tires of material 2. As there are neither large tires of material 2 nor small tires of material 1, the main effects of tire size and material are completely aliased. (Designs with aliasing between main effects would be resolution II and are not implemented in package FrF2. If one really intends to alias two main effects with each other, one can always combine them into one, e.g. in the above example the combined factor could be called “tire”.) Likewise, aliasing between other effects like between two 2fis or between a main effect and a 2fi means that the effects cannot be separated from each other by the design. More technically, in the present context, aliasing refers to structurally determined identity between several effects that arises in fractional factorials.
 Design

“Design” is the shortest term for an experimental plan or experimental layout.
 Degrees of freedom (df)

The data contain a certain number n of independent pieces of information, e.g. in case of a designed experiment we have the number of experimental runs (or a multiple of this number in case of proper replication). In any case, one needs to estimate the overall average from the responses of the experiment so that there are n  1 independent pieces of information left. These are the “degrees of freedom” to start with. We then introduce factors the effects of which we want to estimate. Each effect has degrees of freedom (df) associated with it, e.g. the df for the main effect of a 2level factor are 1 (=21), while the df for the main effect of a 4level factor would be 3 (=41). In total, the sum of the df of all effects that we estimate cannot exceed the df that we have gained from collecting data. If we subtract the df for each effect that is estimated from the overall df, the remaining number are the socalled error degrees of freedom or residual df. In DoE, we often “saturate” models, i.e. we assign all available degrees of freedom to effects so that residual df are 0. In this case, the only way of assessing whether or not an effect is active is by halfnormal plots, fullnormal plots, or effects Paretos; “proper” statistical analysis like Analysis of Variance does require some error degrees of freedom.
 DoE

Design of experiment, also experimental design: The statistical discipline that takes care of planning / designing experiments. Some people also use this expression for the design itself, or for the whole process of running a designed experiment.
 Doptimal

A Doptimal design minimizes the volume of the confidence ellipsoid for the model coefficients (by maximizing the determinant of the model information matrix); requires that a model is specified in advance
 effect

The term “effect” stands for all kinds of impact that a factor or a combination of factors can have on the response. Effect summarizes main effects, 2fis, and even higherorder interactions in one expression. It is also customary to split main effects of multilevel factors into several contributions, e.g. the main effect of a 3level factor may be split into a linear and a quadratic effect. Strictly speaking, the effects are the theoretically “true” impacts on the response, that cannot be observed in an experiment, as there always is experimental error (in CAE experiments, there is often no random error, but there is model error instead). Sometimes, the term effect is also used for the estimated effects, but one should always bear in mind that estimated effects are subject to experimental error and / or model error and / or possible aliasing, so that they are indicative of true effects, but need to be verified (e.g. by confirmation runs, cf. Grove and Davis, 1992, p.83).
 estimate

When running an experiment (setting aside CAE), the response is subject to measurement error and many other sources of random or systematic deviation from
the truth
. Therefore, effects will not be known after the experiment, but can only beestimated
. For estimating a main effect of a 2level factor, for example, one has to calculate the difference between the average response for the two levels. Using the term “estimating” instead of “calculating” emphasizes the fact that there is some variation involved in the actually calculated numbers, as using a different part, or measuring on a different machine or under different environmental conditions (or ...) would have returned a different number. With CAE, things are somewhat different: In a CAE experiment, there is often no measurement error (or very little from computational inaccuracies), but there almost certainly is model error, i.e. the CAE model does not perfectly reflect reality. Hence, any CAE experiment yields insights into model reality, but not necessarily into real world reality.  experiment

“By an experiment we mean any test, evaluation or trial designed to evaluate a change, which requires the collection of measurements (data) so that a judgment (prediction) on the performance of the siystem can be formed, and a decision can be made as to whether further redesign (with further experimentation and prediction) is necessary.” (cited from Grove and Davis, 1992, p.1) In this glossary, the term is used in a more restricted sense for a statistically designed experiment, in which experimentation is done following an experimental plan in a number of factors, each of which has a predetermined set of levels.
 factor

A factor is a characteristic of the system under study that is to be systematically varied over a predetermined set of levels in an experiment.
 fractional factorial

A regular fractional factorial is a design obtained from a full factorial in fewer factors by deliberately assigning additional factors to particular interactions (i.e. by choosing generating contrasts), thereby introducing perfect aliasing between some effects. One can also start from the full factorial in all factors, and state that a regular fractional factorial is a design obtained by taking a regular (!) fraction of the full factorial only. This notion is closer to the expression, of course.
A nonregular fractional factorial analogously takes a nonregular fraction of the experiment one would have to run in case of a full factorial.  full factorial

A full factorial is a design that consists of every possible combination of levels of all the factors. A full factorial of
k
2level factors has2^k
runs (if unreplicated).  generating contrast

A generating contrast or “generator” is needed for generating regular fractional factorials. It is obtained by assigning an additional factor to an interaction column from a full factorial, e.g. ABCDE=I when assigning the additional factor E to the 4factor interaction ABCD in a 16run design: As E equals ABCD in this case, the product of ABCD with E yields a constant column of + (=+1), which is denoted by I.
 base factors

The
k
2level factors making up a2^k
run full factorial design are called the base factors. They can be used for generating a regular 2level fractional factorial.  Hadamard matrix

*
A (transposed) Hadamard matrix is a matrix of 1 and +1 such that all columns of the matrix are orthogonal. All orthogonal 2level arrays can be understood as square Hadamard matrices (when adding a first column of solely +1s). Likewise, any square Hadamard matrix with a first column of solely +1s can be used for creating an orthogonal array for 2level factors.  halfnormal plot

The halfnormal plot is also called Daniel plot, according to Daniel (1959). The idea is as follows: if all factors have no impact on the response, the estimated effects are random numbers with mean 0 and some variance and should roughly follow a normal distribution. The absolute values of these estimated effects thus follow the socalled halfnormal distribution. Now, we can depict the sorted standardized absolute effects against the theoretical quantiles of the standard halfnormal distribution (plotting positions). The plotting positions are chosen such that the effects lie nicely on a line, if they behave like normally distributed random numbers with mean 0. In the context of DoE, one usually hopes that most effects lie on a line through the origin, while a few effects are distinctly larger than the continuation of the line. Those effects that stick out well above (or to the right of) the line are considered “active”, as they are larger than what one would expect from the size of random variation within the experiment.
If the eyeballed line does not point towards the origin, this often indicates presence of an outlier.
Caution: Occasionally, although some effects stick out dramatically, the largest effect almost lies on the eyeballed line. It is unreasonable to argue that the largest effect is inactive but smaller effects are active. Whenever a particular effect is considered active, all larger (in absolute value) effects have to be considered active as well.
Interpretation of halfnormal plots, in case of nonideal appearance, requires careful thinking, looking for outliers, ... Halfnormal plots should be used with great care or not at all in experiments with few runs only (e.g. 8 run experiments). If replications are present, it can be better to use analysis of variance (provided the replications of one and the same run represent all kinds of random variation that may be encountered between runs) than to use halfnormal plots. Whenever halfnormal plots are used, one should include all effects  also those associated with empty columns  in the plot. Therefore, screening designs created by RcmdrPlugin.DoE include those empty columns per default.
 hereditary principle

The idea that an interaction is less likely to be important if one or both of the involved main effects are inactive, is called the “hereditary principle”. In case of aliasing between two 2fis, if the interaction column that hosts the two aliased 2fis, is estimated to have a considerable effect, the hereditary principle can sometimes be used to resolve the issue which of the two 2fis is responsible for this finding: If one of the two 2fis involves a main effect that is not estimated to be important, while for the other both the involved main effects are estimated to be important, the hereditary principle suggests that the 2fi with two “parents” is the likely responsible. Nevertheless, it is possible that a 2fi is truly important, although only one (or even none) of the two involved main effects is active. Therefore, in case of ambiguity it is always a good idea to do confirmation runs or followup experiments.
 I

I denotes a constant column of + (or +1, depending on notation) of appropriate length. Therefore, the letter
I
is not used for factor names (neither isi
).  interaction

It is possible that the main effect of a factor
B
given the first level of a factorA
is substantially different from the main effect of factorB
given the second level of factorA
. In this case, it is said that there is a 2factor interaction between factorsA
andB
. One can extend the concept of interactions to multifactor interactions (also called higherorder interactions). In practice, however, interactions between more than 2 factors are very rarely considered important and are very difficult to interpret.  latin hypercube

Computer experiments usually do not benefit from repeating runs, because the results will be virtually the same. Therefore, one tries to use designs that do not produce replications when projected into lowerdimensional space (e.g. for modelling with a few factors that turn out to be relevant only). Latin hypercube designs or latin hypercube samples have as many levels for each factor as there are runs. Usually, one tries to choose level combinations such that the design is “spacefilling”, i.e. fills the experimental space with points so that the experiment provides information everywhere in the experimental region.
 level

A level is one of the predetermined settings over which a factor is varied (usually very few, in package FrF2 mostly two, sometimes also four (not yet implemented). For example, the factor temperature could have the two levels 0 and 20 degree Celsius. Determining the levels of a factor is a very important step in planning an experiment, as the results might be very different, when looking at e.g. 15 and 35 degree Celsius instead of 0 and 20.
 linear effect, quadratic effect

For a quantitative factor, the response can be modeled as a linear function of the size of the factor, i.e. denoting the response by
y
and the factors value byx
, we can writey=a+bx
. If the factor has 2 levels only in the experiment, we can estimateb
from the data, but it is impossible to check, whether the factors effect on the response is wellapproximated by a linear function. If the factor has more than 2 levels, we can find out, whether a linear function is appropriate, e.g. by additionally fitting a quadratic effect,y=a+bx+cx^2
. In 2level experiments with quantitative factors, it is also customary to incorporate a few socalled center points, which are in the middle between extremes for all factors. By comparing their average to the average results from the other points, linearity can be checked.  main effect

The main effect for a 2level factor is defined as the (true) difference between the (true) responses for the two levels of the factor. It is estimated by the difference between the averages of measured responses for the two levels of the factor. Often, the term “main effect” is used for the true unobservable difference as well as for the estimated effect from an experiment. It is, however, useful to be aware that there is a difference, that is due to measurement error, aliasing, ...
The main effect for factors with more than two levels is made up of several components or degrees of freedom (df), where df = (levels  1). For a quantitative 3level factor (2 df), one often talks about the linear and the quadratic effect, which can in case of equidistant levels be estimated by the difference between the average responses of the high and the low level (linear effect) and by the difference of the average response of the middle level from the average response of the two outer levels (quadratic effect). Likewise, one can discuss linear, quadratic, and cubic effects for 4level factors and so on. For qualitative factors  e.g. type of material, shape of gasket etc.  one possibility is to define a reference category, e.g. the current level, and to formulate the main effect in terms of the difference of the response on each level to the response for the reference category.
 Median

For obtaining the median of a group of values, first sort the values by size. For an odd number of values, the median is the middle value in the sorted series. For an even number of values, the median is the average of the two middle values of the sorted series. Thus, the median is a value that splits the data into a bottom and a top half.
 mixed level orthogonal array

An orthogonal array that contains factors with both 2 level and 3 levels is called a “mixed level orthogonal array” or “mixed level array”. Such arrays are implemented under menu “General Factorial”.
 naming convention for factors

It is a convention that factors in experimental plans are abbreviated by capitalized letters from the alphabet, where usually the letter
I
is skipped as it has a special meaning in the literature on experimental plans. Once one runs out of capital letters as there are more than 25 factors, conventions are less unique; some people use numbers, others small letters (e.g. default in this software or Minitab), .... If the small letters are also exhausted, this software uses F1, F2, ...Interactions in 2level fractional factorials are denoted by the ordered sequence of factor names of the factors involved, e.g. AB denotes the 2fi between factors A and B, BEFH denotes the four factor interaction between the four included factors. These sequences of letters can be used simultaneously for naming the appropriate column in the design and for naming the whole interaction effect.
 PlackettBurman designs

Plackett and Burman (1946) introduced 2level orthogonal arrays that are not obtained as regular fractional factorials. If the number of runs is not a power of 1, these designs have any particular interaction partially aliased with several main effects, so that on the one hand we don't find unconfounded main effects, but on the other hand, no main effect is completely distorted by a single interaction effect. Note that these designs cannot be used for estimating interactions or for constructing 4level factors from a pair of 2level factors. However, a few subsequent analyses have been proposed to use these designs for modelling after using them for screening (requires expert knowledge, not included in this software).
 Projection properties, projectivity

The term “projection properties” refers to the properties of a design, when attention is restricted to a few (seemingly) active factors only, for example in the case of screening designs, where some factors are ruled out as unimportant. A design is said to be of projectivity 3, if it contains at least one full factorial (plus possibly some repeat runs) in any triple of three factors. Analogously, a design is said to be of projectivity 4, if it contains at least one full factorial (plus possibly some repeat runs) in any set of four factors etc. For PlackettBurman designs, projection properties have been studied in detail by Lin and Draper (1992), Draper and Lin (1995) and Box and Tyssedal (1996). The work on 16 run Hadamard matrices by Box and Tyssedal (2001) is also based on projection properties. It forms the basis of the 16 run screening designs used per default in this software.
 randomize

Randomization is a means of trying to avoid effects of unknown factors that may for example change over time. In the DoE context, it is advisable to randomize the run order, as time might introduce unexpected effects that can lead to misleading results. Randomizing is the default for all experiments, except if hardtochange factors are declared.
Since experimentation without randomization runs great risks particularly in case of very systematic run orders like the one used for hardtochange factors, one should normally strive to run an experiment in randomized order. However, if the experiment becomes *much* more difficult this way, it may be acceptable to deviate from this rule.
 replication/repetition

Both replication and repetition stand for repeating a measurement with exactly the same configuration of factor levels. The difference between these two concepts is as follows (cf. Grove and Davis, 1992, p.155/p.198): Replication should ideally reflect all possibilities of experimental error; for example, if installing a part in the system may cause variation, replication of a run should not just install a part once and measure the response twice, but should at least reinstall the part before remeasuring. Better even, a different part with the same configuration should be installed for also capturing parttopart variation.
In many cases, it may be more useful to run a genuine 16run design instead of twice replicating an 8run design. Cost may be a driver of using replication instead of a truly larger design, and the desire for a good estimate of experimental variability may be another driver for replication.
Repetition mainly refers to production and measurement processes. It should not introduce experimental error but rather reflect just the errors that one can expect to occur in normal production or measurement. For example, if some factors refer to machine setup for producing some parts, repetition means that the machine is setup once, and several parts are produced under the same setup.
Per default, this software considers proper replications. These are randomized in blocks, such that the first replicate of each run in randomized order is conducted before the second replication of any run starts. Under option “repeat.only”, repeated runs occur all together in a row, assuming that they are repeated measurements.
 resolution

Resolution is the smallest possible number of factors that appears in a pair of aliased effects, e.g. if there is an alias between a main effect and a 2fi, the resolution is III (resolution is usually denoted in Roman numbers). More technically speaking, resolution is the length of the shortest word.
The literature sometimes uses resolution
III*
for designs of resolution III with specific favourable properties. These will be made use of in the future. They have not been implemented yet.  response

In an experiment, the response is a quantity that quantifies the performance of the system under investigation. It can be a measurement itself, a quantity calculated from several measurements, ...
 response surface design

Experimental plans that are meant to model the response as a smooth function of a set of quantitative factors  often second order, i.e. including quadratics of each factor and linear by linear interactions between each pair of factors  are called response surface designs. Such designs can be created by augmenting appropriate regular 2level fractional factorial designs with center and star points.
 robustness experiment

A robustness experiment (or robustness study) is dedicated to finding factors (socalled control factors) that can be used in designing the product (or process) for making the response insensitive (=robust) to socalled noise factors that cannot be influenced by the engineer (like customer usage conditions, outside temperature, ...). For analysis of data from robustness experiments (setting aside the famous but questionable S/N ratio approach, cf. e.g. Grove and Davis 1992, Chapter 11), 2fis between noise factors and control factors are extremely important.
 run

Any configuration of factor levels for which a response is recorded is called a run. Some people use the term “run” for distinct configurations only so that an 8run design with 2 replications would still be called an 8run design, while other people would call such a design a 16run design. This software adopts the first view.
 run order

Run order refers to the temporal order in which the runs in an experiment are arranged. Usually, the run order should be randomized. However, it is nevertheless often helpful for thinking about the experimental structure, if one can look at the experiment in standard order. Therefore, the attribute run.order of all designs allows to switch back and forth between randomized and standard order.
 clear

“clear” refers to the absence of aliasing. It is customary in the literature to talk of effects of being clear if they are neither aliased with a main effect nor with a 2fi. They may be aliased with higherorder interactions.
 WLP

*
short for “Word length pattern”, cf. “word”  word

*For regular 2level fractional factorial designs, any product of factors that resolves to
I
is termed a word. For example, if the product CDEF yields a constant column of “+1”, CDEF is a word of length four (as there are four factors involved). The number of (nontrivial) words for a design is2^g1
withg
denoting the number of generating contrasts.For irregular designs and mixedlevel designs, it is possible to determine the number of generalized words (usually of lengths 3 and 4), by summing up the scalar products of the intercept column with all length 3 or 4 combinations of orthogonal effect columns for three or four different factors (Xu and Wu 2001).
 Yates order

Frank Yates is a renowned experimenter, who found an ordering of the rows of an experiment that made it easy to calculate effects even in the absence of computers. Originally, “Yates order” is the term for this order of the rows. It is now customary to list the columns in the exactly analogous order as well: This order comes about by appending each new factor as the last column and then appending its products with all the preceding columns in the order of occurrence. This leads to the sequence A, B, AB, C, AC, BC, ABC, D, AD, BD, ABD, CD, ... It can therefore be said that the columns are listed in Yates order, although “Yates order” originally referred to the order of the rows.
The list
Yates
in this software indicates for each column position, which factors are involved in the respective effect. The column numbers of the thusobtained matrix are a customary way to denote generating contrasts in the literature on 2level fractional factorials.
Author(s)
Ulrike Groemping
See Also
See also pb
and FrF2
for the functions that do the calculations,
catlg
for the catalogue of regular 2level fractional factorial designs,
and Menu.2level
for overall help on 2level factorials in this DoE software.