SAGA: Software for the Analysis of Genetic Architecture

Implements an information theory approach to the analysis of line cross data providing model averaged results of parameter estimates and unconditional standard errors. Also includes functions to provide a visualization of models space, custom plots of multi-model inference results, and traditional line cross analysis plots.

AuthorHeath Blackmon and Jeffery P. Demuth
Date of publication2015-12-03 13:05:04
MaintainerHeath Blackmon <coleoguy@gmail.com>
LicenseGPL (>= 2)
Version2.0.0
https://github.com/coleoguy/SAGA

View on CRAN

Files in this package

SAGA
SAGA/inst
SAGA/inst/cmatrix.xy.csv
SAGA/inst/doc
SAGA/inst/doc/model-averaged-analysis.R
SAGA/inst/doc/model-averaged-analysis.pdf
SAGA/inst/doc/model-averaged-analysis.Rmd
SAGA/inst/cmatrix.zw.csv
SAGA/inst/genome.scale.csv
SAGA/inst/cmatrix.esd.csv
SAGA/NAMESPACE
SAGA/data
SAGA/data/SR.rda
SAGA/data/PH.rda
SAGA/data/ban.osa.rda
SAGA/data/dar.bho.rda
SAGA/data/per.inf.rda
SAGA/data/sin.cro.rda
SAGA/data/SL.rda
SAGA/R
SAGA/R/EvaluateModel.R SAGA/R/plot.genarch.R SAGA/R/VisModelSpace.R SAGA/R/cohortID.R SAGA/R/AnalyzeCrossesMM.R SAGA/R/AICtoMW.R SAGA/R/DisplayCmatrix.R SAGA/R/plotObserved.R
SAGA/vignettes
SAGA/vignettes/model-averaged-analysis.Rmd
SAGA/MD5
SAGA/build
SAGA/build/vignette.rds
SAGA/DESCRIPTION
SAGA/man
SAGA/man/VisModelSpace.Rd SAGA/man/AnalyzeCrossesMM.Rd SAGA/man/cohortID.Rd SAGA/man/plot.genarch.Rd SAGA/man/DisplayCmatrix.Rd SAGA/man/data.Rd SAGA/man/EvaluateModel.Rd SAGA/man/plotObserved.Rd SAGA/man/AICtoMW.Rd SAGA/man/SAGA-package.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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