DisplayCmatrix: Display a matrix of composite genetic effects

In SAGA: Software for the Analysis of Genetic Architecture

Description

A data frame representing the c-matrix scaled to the midparent. Column names describe the composite effects. The argument "esd" should be used for species that do not have sex chromosomes.

Usage

DisplayCmatrix(table = "XY")

Arguments

table

a character string specifying the sex determination system. Current options are "XY", ZW", "esd"

Value

M	mean
Aa	autosomal additive
Ad	autosomal dominance
Xa	X chromosome additive
Xd	X chromosome dominance
Ya	Y chromosome additive
Ca	cytotype additive
Mea	maternal effect additive
Med	maternal effect dominance
AaAa	autosomal additive by additive epistasis
AaAd	autosomal additive by dominance epistasis
AdAd	autosomal dominance by dominance epistasis
XaAa	X chromosome additive by autosomal additive epistasis
XaAd	X chromosome additive by autosomal dominance epistasis
XdAa	X chromosome dominance by autosomal additive epistasis
XdAd	X chromosome dominance by autosomal dominance epistasis
YaAa	Y chromosome additive by autosomal additive epistasis
YaAd	Y chromosome additive by autosomal dominance epistasis
YaXa	Y chromosome additive by X additive epistasis
CaAa	cytotype additive by autosomal additive epistasis
CaAd	cytotype additive by autosomal dominance epistasis
CaXa	cytotype additive by X chromosome additive epistasis
CaXd	cytotype additive by X chromosome dominance epistasis
CaYa	cytotype additive by Y chromosome additive epistasis

Author(s)

Heath Blackmon and Jeffery P. Demuth

Examples

cmat <- DisplayCmatrix("XY")

SAGA documentation built on May 30, 2017, 6:42 a.m.