plot.genarch: provides a custom plot of a genarch object

In SAGA: Software for the Analysis of Genetic Architecture

Description

Plot a publication quality figure of a genarch object with many built-in customization such as only a subset with variable importances over a chosen cut-off. If a cut-off is chosen that would make it so only a single bar would be plotted the min.vi argument will be automatically reduced to include at least the two CGEs with the highest variable importance.

Usage

## S3 method for class 'genarch'
plot(x, min.vi = .5, main=NULL, 
             cex.axis=1, cex.names=1, cex.main=1, 
             maxval=NULL, minval=NULL, viridis=F, ...)

Arguments

x	This is the observed data used in the function AnalyzeCrossesMM
min.vi	This is a "genarch" object returned by the function AnalyzeCrossesMM
main	title for the Y axis
cex.axis	expansion factor for Y axis
cex.names	expansion factor for CGE names on x axis
cex.main	expansion factor for main title
maxval	custom maximum value for a plot
minval	custom minimum value for a plot
viridis	logical indicating if the viridis color palette should be used
...	further arguments passed to plot

Author(s)

Heath Blackmon and Jeffery P. Demuth

Examples

data(PH)
results <- AnalyzeCrossesMM(PH)
plot(results)

SAGA documentation built on May 30, 2017, 6:42 a.m.