mkDF: Converts seerSet$L series to a data.frame

In SEERaBomb: SEER and Atomic Bomb Survivor Data Analysis Tools

Description

Creates a data.frame of observed and expected cases for each first and second cancer and treatment. Use of this function is deprecated. Use getDF() instead, if needed: csd now calls getDF internally for the most recent time series, so even it may not need to be called directly.

Usage

mkDF(seerSet,srs)

Arguments

seerSet	seerSet object produced by tsd().
srs	Series. The time series of interest. NULL (default) implies the currently active series, which is the most recent. A number i implies the ith series. A string identifies the series by name (numeric vectors will be coerced to such a string via paste0("b",paste(brks,collapse="_")) where brks = vector of time breakpoints.

Value

A data.frame in long format that can be used by ggplot.

Author(s)

Tom Radivoyevitch ([e-mail])

See Also

SEERaBomb-package, mk2D, tsd

Examples

## Not run:  
library(SEERaBomb)
load("~/data/SEER/mrgd/cancDef.RData") #load in canc
load("~/data/SEER/mrgd/popsae.RData") # load in popsae
canc=canc%>%select(-reg,-recno,-agerec,-numprims,-COD,
          -age19,-age86,-radiatn,-ICD9,-db,-histo3) 
popsa=popsae%>%group_by(db,race,sex,age,year)%>%summarize(py=sum(py)) # sum on regs
pm=seerSet(canc,popsa,Sex="male",ageStart=0,ageEnd=100) #pooled (races) male seerSet
pm=mk2D(pm,secondS=c("AML","MDS"))
brks=c(0,1,5)
firstS=c("NHL","MM")
pm=tsd(pm,brks=brks,trts=c("rad","noRad"),firstS=firstS)
mkDF(pm)

## End(Not run)

SEERaBomb documentation built on Dec. 16, 2019, 1:21 a.m.