getE: Get expected numbers of cases

In SEERaBomb: SEER and Atomic Bomb Survivor Data Analysis Tools

Description

Converts list of matrices produced by post1PYO into a matrix that corresponds to the matrix of observed cases produced by post1PYO.

Usage

getE(LPYM,D,ageStart,ageEnd,yearEnd,firstS,secondS)

Arguments

LPYM	List of first cancer PY matrices produced by post1PYO.
D	D component of seerSet list produced by mk2D.
ageStart	ageStart component of seerSet.
ageEnd	ageEnd component of seerSet.
yearEnd	The most recent year in the SEER datasets.
firstS	Character vector of first cancers of interest; added to seerSet by tsd.
secondS	Character vector of second cancers of interest; added to seerSet by mk2D.

Value

A matrix of expected cases with first cancers labeling the rows and second cancers labeling the columns.

Author(s)

Tom Radivoyevitch ([e-mail])

See Also

SEERaBomb-package, seerSet

Examples

## Not run: 
library(SEERaBomb)
pm=simSeerSet()
pm=mk2D(pm,secondS="B") 
L=post1PYO(pm$canc,brks=c(0,2,5),binIndx=1,Trt="rad",yearEnd=2012 )
names(L)
names(pm)
with(pm,getE(L$LPYM,D,ageStart,ageEnd,yearEnd,cancerS,secondS))

## End(Not run)

SEERaBomb documentation built on Dec. 16, 2019, 1:21 a.m.