check.path: Check if two genes belong to any common KEGG pathway.
In SHIP: SHrinkage covariance Incorporating Prior knowledge
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Takes as arguments two vectors of IDs and test whether they have a common ID.
Usage
1
check.path(p1, p2)
Arguments
p1
Vector of pathways that gene 1 belongs to.
p2
Vector of pathways that gene 2 belongs to.
Value
Return 0 if the two genes don't belong to a common pathway, return 1 otherwise.
This is an internal function used by the function target.help.
Author(s)
Monika Jelizarow and Vincent Guillemot
See Also
Examples
1
2
3
4
5
g1 <- c("path1","path2","path3","path4")
g2 <- c("path5","path6","path3","path11")
g3 <- c("path10","path5","path12","path13")
check.path(g1,g2) # 1
check.path(g1,g3) # 0
SHIP documentation built on May 1, 2019, 8:29 p.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Takes as arguments two vectors of IDs and test whether they have a common ID.
Usage
1 | check.path(p1, p2)
|
Arguments
p1 |
Vector of pathways that gene 1 belongs to. |
p2 |
Vector of pathways that gene 2 belongs to. |
Value
Return 0 if the two genes don't belong to a common pathway, return 1 otherwise.
This is an internal function used by the function target.help.
Author(s)
Monika Jelizarow and Vincent Guillemot
See Also
Examples
1 2 3 4 5 | g1 <- c("path1","path2","path3","path4")
g2 <- c("path5","path6","path3","path11")
g3 <- c("path10","path5","path12","path13")
check.path(g1,g2) # 1
check.path(g1,g3) # 0
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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