cell_order: Sort cells according to their progress through a process
In SLICER: Selective Locally Linear Inference of Cellular Expression Relationships
Description
Usage
Arguments
Value
Examples
Description
Uses the values computed by process_distance to order cells.
Usage
1
cell_order(traj_graph, start)
Arguments
traj_graph
Nearest neighbor graph built from LLE embedding
start
Index of starting cell
Value
Sorted vector of cell indices
Examples
1
2
3
4
5
6
7
8
genes=1:200
cells=sample(1:500,30)
data(traj)
k=10
traj_lle = lle::lle(traj[cells,genes],m=2,k)$Y
traj_graph = conn_knn_graph(traj_lle,5)
start=1
cells_ordered = cell_order(traj_graph,start)
SLICER documentation built on May 1, 2019, 6:32 p.m.
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Description Usage Arguments Value Examples
Description
Uses the values computed by process_distance to order cells.
Usage
1 | cell_order(traj_graph, start)
|
Arguments
traj_graph |
Nearest neighbor graph built from LLE embedding |
start |
Index of starting cell |
Value
Sorted vector of cell indices
Examples
1 2 3 4 5 6 7 8 | genes=1:200
cells=sample(1:500,30)
data(traj)
k=10
traj_lle = lle::lle(traj[cells,genes],m=2,k)$Y
traj_graph = conn_knn_graph(traj_lle,5)
start=1
cells_ordered = cell_order(traj_graph,start)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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