select_genes: Select genes to use in building a cell trajectory

Description Usage Arguments Value Examples

View source: R/SLICER.R

Description

This function uses "neighborhood variance" to identify genes that vary smoothly, rather than fluctuating randomly, across the set of cells. Genes selected in this way can then be used to construct a trajectory.

Usage

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select_genes(embedding)

Arguments

embedding

Low-dimensional LLE embedding of cells

Value

Vector containing indices of selected genes

Examples

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## Not run: 
genes = select_genes(traj)

## End(Not run)

SLICER documentation built on Aug. 23, 2017, 1:02 a.m.