select_genes: Select genes to use in building a cell trajectory
In SLICER: Selective Locally Linear Inference of Cellular Expression Relationships
Description
Usage
Arguments
Value
Examples
Description
This function uses "neighborhood variance" to identify genes
that vary smoothly, rather than fluctuating randomly, across
the set of cells. Genes selected in this way can then be used
to construct a trajectory.
Usage
1
select_genes(embedding)
Arguments
embedding
Low-dimensional LLE embedding of cells
Value
Vector containing indices of selected genes
Examples
1
2
3
4
## Not run:
genes = select_genes(traj)
## End(Not run)
Example output
SLICER documentation built on May 1, 2019, 6:32 p.m.
R Package Documentation
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Description Usage Arguments Value Examples
Description
This function uses "neighborhood variance" to identify genes that vary smoothly, rather than fluctuating randomly, across the set of cells. Genes selected in this way can then be used to construct a trajectory.
Usage
1 | select_genes(embedding)
|
Arguments
embedding |
Low-dimensional LLE embedding of cells |
Value
Vector containing indices of selected genes
Examples
1 2 3 4 | ## Not run:
genes = select_genes(traj)
## End(Not run)
|
Example output
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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