Description Usage Arguments Value Examples

The geodesic entropy of a trajectory can be used to detect
branches. This function computes geodesic entropy and
produces a plot that can be used to visually confirm
the branches detected by `assign_branches`

.

1 | ```
compute_geodesic_entropy(traj_graph, start)
``` |

`traj_graph` |
Nearest neighbor graph built from LLE embedding |

`start` |
Index of start cell |

Vector of geodesic entropy values. Item k is the geodesic entropy k steps away from the start cell.

1 2 3 4 5 6 7 | ```
## Not run:
traj_lle = lle(traj[,genes],m=2,k)$Y
traj_graph = conn_knn_graph(traj_lle,5)
start=1
compute_geodesic_entropy(traj_graph,start)
## End(Not run)
``` |

SLICER documentation built on Aug. 23, 2017, 1:02 a.m.

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