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## ----eval=FALSE----------------------------------------------------------
# library("devtools")
# install_github("jw156605/SLICER")
## ----eval=FALSE----------------------------------------------------------
# library(SLICER)
# genes = select_genes(traj)
# k = select_k(traj[,genes], kmin=5)
# traj_lle = lle(traj[,genes], m=2, k)$Y
# traj_graph = conn_knn_graph(traj_lle,5)
# ends = find_extreme_cells(traj_graph, traj_lle)
# start = 1
# cells_ordered = cell_order(traj_graph, start)
# branches = assign_branches(traj_graph,start)
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