Nothing
CDCabove <-
function(behavior,phaseX,v1,v2){
nsucces=c(0,0,0,0,5,6,6,7,8,8,9,9,10,11,12,12,12,13,13,14,14,15,15,17,17,18,18,19,19,20,20,21,22,23,23,24,24,25,25,26,27,27,28,28,29,29,30,31,31,32)
t1<-table(phaseX)
tmaxA<-t1[names(t1)==v1]
startA<-match(v1,phaseX)
endA<-tmaxA+startA-1
A<-behavior[startA:endA]
meanA=mean(A,na.rm=T)
sdA=(sd(A,na.rm=T))*.25
meanA<-meanA+sdA
x1=(c(seq(1:tmaxA)))
regA<-lm(A~x1)
rA<-residuals(regA)
yA<-regA$coefficients[1]
BetaA<-regA$coefficient[2]
tmaxB<-t1[names(t1)==v2]
startB<-match(v2,phaseX)
endB<-tmaxB+startB-1
#tsxB<-behavior[startB:endB]
B=(behavior[startB:endB])
cdcl<-c(A,NA,B)
y<-na.omit(cdcl)
total=length(y)
iv=(1:total)
end<-which(is.na(cdcl))
iv<-insert(iv,NA,end)
x2=iv[end+1:total]
regc<-lm(cdcl~iv)
x2<-na.omit(x2)
yA<-yA+sdA
Byhat<-yA+x2*BetaA
Byhat<-na.omit(Byhat)
yhatA<-Byhat[startA:endA]
startB<-startB-1
endB<-endB-1
yhatB<-Byhat[startB:endB]
maxy=which.max(cdcl)
max<-cdcl[maxy]+1
numx<-sum(!is.na(cdcl))+3
par(mfrow=c(3,3))
maxy=which.max(behavior)
max<-behavior[maxy]+1
miny=which.min(behavior)
min<-behavior[miny]
numx<-sum(!is.na(behavior))+3
naboveline<-B>Byhat
nabovemean<-B>meanA
nabove<-table(naboveline,nabovemean)
needed=nsucces[tmaxB]
trues<-data.frame(naboveline,nabovemean)
ntrue<-sum(trues$naboveline=="TRUE" & trues$nabovemean=="TRUE")
lin1<-c("needed=", needed,"TRUE=",ntrue)
print(lin1)
trues<-data.frame(naboveline,nabovemean)
ntrue<-sum(trues$naboveline=="TRUE" & trues$nabovemean=="TRUE")
writeLines("-----------------above lines----------------------------------------")
writeLines ("TRUE, TRUE = Number above the lines")
print(nabove)
writeLines("-------------------------------------------------------------------")
if (ntrue >= needed){
writeLines ("Note: Rsults indicate a singnifican difference between the pahses.")
writeLines (" The number TRUE is greater than or equal to the number needed.")
}
if (ntrue < needed){
writeLines ("Note: Rsults indicate a non singnifican difference between the pahses.")
writeLines (" The number TRUE is less than the number needed.")}
graphics.off()
layout(rbind(1,2), heights=c(4,1))
plot(iv,cdcl, ylim=c(min,max),lwd=2,type="o",col="red", bty="l",xlab="time", ylab="behavior", main="CDC Above" )
abline(h=(meanA),col="green")
abline(a=yA,b=BetaA,col='Blue',lty="dashed")
par(mar=c(1, 1, 1, 1))
plot.new()
legend("center", c("Adj. regression line","Adj. mean line"), col = c("blue","green"), lwd = 1,ncol=2,bty ="n")
}
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