STAR: Spike Train Analysis with R
Version 0.3-7

Functions to analyze neuronal spike trains from a single neuron or from several neurons recorded simultaneously.

Browse man pages Browse package API and functions Browse package files

AuthorChristophe Pouzat
Date of publication2012-11-09 02:58:02
MaintainerChristophe Pouzat <christophe.pouzat@gmail.com>
LicenseGPL (>= 2)
Version0.3-7
URL http://sites.google.com/site/spiketrainanalysiswithr
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("STAR")

Man pages

acf.spikeTrain: Auto- Covariance and -Correlation Function Estimation for...
as.repeatedTrain: Coerce and Test repeatedTrain Objects
as.spikeTrain: Coerce, Test and Extract from spikeTrain Objects
brt4df: Get Backward Recurrence Times from Data Frames Generated by...
changeScale: Change the Scales of a quickPredict Object for an Interaction...
cockroachALData: Spike Trains of several Cockroach Antennal Lobe Neurons...
coef.durationFit: Utility Functions for durationFit Objects
compModels: Compare Duration Models on a Specific Data Set
crossGeneral: Computations of Boundary Crossing Probabilities for the...
df4counts: Generates a Data Frame from a repeatedTrain Object After Time...
diff.spikeTrain: diff method for spikeTrain objects
dinvgauss: The Inverse Gaussian Distribution
dllogis: The Log Logistic Distribution
drexp: The Refractory Exponential Distribution
frt: Computes Forward Recurrence Times from Two transformedTrain...
gamlockedTrain: Function to Smooth a lockedTrain Object and Related Methods:...
gammaMLE: Maximum Likelihood Parameter Estimation of a Gamma Model with...
gamObj: Generic Function and Methods for Extracting a gamObject
gampsth: Smooth Peri Stimulus Time Histogram Related Functions and...
gsslockedTrain: Function to Smooth a lockedTrain Object and Related Methods:...
gssObj: Generic Function and Methods for Extracting a gss object
gsspsth: Smooth Peri Stimulus Time Histogram Related Functions and...
hgamma: Hazard Functions for Some Common Duration Distributions
hist.lockedTrain: Auto- and Cross-Intensity Function Estimate for Spike Trains
invgaussMLE: Maximum Likelihood Parameter Estimation of an Inverse...
isi: Get Lagged Inter Spike Intervals (ISIs) From Data Frames...
isiHistFit: ISI Histogram With Fitted Model and CI
jpsth: Related Functions and Methods for Joint-PSTHs and Joint...
llogisMLE: Maximum Likelihood Parameter Estimation of a Log Logistic...
lnormMLE: Maximum Likelihood Parameter Estimation of a Log Normal Model...
lockedTrain: Construct and Plot Time-Dependent Cross-correlation Diagram
mkAR: Generate a Data Frame With Variables Suitable For an AR Like...
mkCPSP: Counting Process Sample Paths
mkDummy: Generates a Data Frame of Dummy Variables for Use in gam
mkGLMdf: Formats (lists of) spikeTrain and repeatedTrain Objects into...
mkM2U: Makes a Smooth Function Mapping a Data Frame Variable Onto a...
mkREdf: Evaluates RateEvolutions for spikeTrain Lists and Returns...
plot.frt: Plots and Summarizes frt Objects.
plot.quickPredict: Graphical Methods for quickPredict Objects
plot.spikeTrain: Display Counting Process Associated with Single Spike Train
plot.ssanova: A Plot Method for ssanova and ssanvoa0 Objects Tailored to...
plot.transformedTrain: Plot Diagnostics for an transformedTrain Object
predictLogProb: Compute the Log Probability of a "New" Data Set Using a...
print.repeatedTrain: Print and Summary Methods for repeatedTrain Objects
print.spikeTrain: Print and Summary Methods for spikeTrain Objects
psth: Compute and Plot Peri-Stimulus Time Histogram
purkinjeCellData: Spike Trains of a Purkinje Cells (PC) Recorded in Control...
qqDuration: Quantile-Quantile Plot For Fitted Duration Distributions
quickPredict: A Simple Interface to predict method for ssanova and ssanova0...
raster: Generate a Raster Plot
rateEvolution: Evaluates and Plots a Spike Train Firing Rate's Evolution
renewalTestPlot: Non-Parametric Tests for Renewal Processes
reportHTML: Generic Function for Automatic HTML Report Generation
reportHTML.gam: Generates a Report in HTML Format from a STAR gam Object
reportHTML.repeatedTrain: Performs Basic Spike Train Analysis and Generates a Report in...
reportHTML.spikeTrain: Performs Basic Spike Train Analysis and Generates a Report in...
rexpMLE: Maximum Likelihood Parameter Estimation of a Refractory...
ShallowShocks: Shallow Shocks (M >= 6.0) in OFF Tohoku Area for 1885-1980
STAR-package: Spike Train Analysis with R
summary.CountingProcessSamplePath: Create and Explore Counting Process Sample Path Summaries
summary.transformedTrain: Summary of transformedTrain Objects
thinProcess: Simulate and Analyse Data From a Model Fitted With gss
transformedTrain: Performs Time Transformation of Spike Trains Fitted with glm...
tt: Time Transformation Using a gssanova Objet
varianceTime: Variance-Time Analysis for Spike Trains
weibullMLE: Maximum Likelihood Parameter Estimation of a Weibull Model...

Functions

CAL1S Man page
CAL1V Man page
CAL2C Man page
CAL2S Man page
STAR Man page
STAR-package Man page
ShallowShocks Man page
[.spikeTrain Man page
\%frt\% Man page
\%qp\% Man page
\%tt\% Man page
acf.spikeTrain Man page Source code
as.CPSP Man page Source code
as.repeatedTrain Man page Source code
as.spikeTrain Man page Source code
brt4df Man page Source code
changeScale Man page Source code
coef.durationFit Man page Source code
compModels Man page Source code
contour.jpsth Man page Source code
contour.quickPredict Man page Source code
crossGeneral Man page Source code
crossTight Man page Source code
df4counts Man page Source code
diff.spikeTrain Man page Source code
dinvgauss Man page Source code
dllogis Man page Source code
drexp Man page Source code
e060517ionon Man page
e060517spont Man page
e060817citron Man page
e060817mix Man page
e060817spont Man page
e060817terpi Man page
e060824citral Man page
e060824spont Man page
e070528citronellal Man page
e070528spont Man page
frt Man page Source code
gamObj Man page Source code
gamObj.gamlockedTrain Man page Source code Source code
gamObj.gampsth Man page Source code
gamlockedTrain Man page Source code
gammaMLE Man page Source code
gampsth Man page Source code
gssObj Man page Source code
gssObj.gsslockedTrain Man page Source code
gssObj.gsslockedTrain0 Man page
gssObj.gsspsth Man page Source code
gssObj.gsspsth0 Man page
gsslockedTrain Man page Source code
gsslockedTrain0 Man page Source code
gsspsth Man page Source code
gsspsth0 Man page Source code
hgamma Man page Source code
hinvgauss Man page Source code
hist.lockedTrain Man page Source code
hllogis Man page Source code
hlnorm Man page Source code
hrexp Man page Source code
hweibull Man page Source code
image.jpsth Man page Source code
image.quickPredict Man page Source code
invgaussMLE Man page Source code
is.durationFit Man page Source code
is.repeatedTrain Man page Source code
is.spikeTrain Man page Source code
is.varianceTime Man page Source code
isi Man page Source code
isiHistFit Man page Source code
jpsth Man page Source code
jpsth2df Man page Source code
jsd Man page Source code
lines.CountingProcessSamplePath Man page Source code
lines.FirstPassageTime Man page Source code
lines.quickPredict Man page Source code
llogisMLE Man page Source code
lnormMLE Man page Source code
lockedTrain Man page Source code
logLik.durationFit Man page Source code
mPK Man page
maxIntensity Man page Source code
mkAR Man page Source code
mkCPSP Man page Source code
mkDiscreteLockedTrain Source code
mkDiscreteTrain Source code
mkDummy Man page Source code
mkGLMdf Man page Source code
mkM2U Man page Source code
mkMappedI Man page Source code
mkPostSimAnalysis Man page Source code
mkREdf Man page Source code
mkSelf Man page Source code
mkSimFct Man page Source code
mkTightBMtargetFct Man page Source code
persp.jpsth Man page Source code
persp.quickPredict Man page Source code
pinvgauss Man page Source code
pllogis Man page Source code
plot.CountingProcessSamplePath Man page Source code
plot.CountingProcessSamplePath.summary Man page Source code
plot.FirstPassageTime Man page Source code
plot.frt Man page Source code
plot.gamlockedTrain Man page Source code
plot.gampsth Man page Source code
plot.gsslockedTrain Man page Source code
plot.gsslockedTrain0 Man page
plot.gsspsth Man page Source code
plot.gsspsth0 Man page
plot.hist.lockedTrain Man page Source code
plot.lockedTrain Man page Source code
plot.psth Man page Source code
plot.quickPredict Man page Source code
plot.rateEvolution Man page Source code
plot.repeatedTrain Man page Source code
plot.spikeTrain Man page Source code
plot.ssanova Man page Source code
plot.ssanova0 Man page
plot.transformedTrain Man page Source code
plot.varianceTime Man page Source code
plot_spsth Source code
postFitFormat Source code
predictLogProb Man page Source code
prexp Man page Source code
print.CountingProcessSamplePath Man page Source code
print.CountingProcessSamplePath.summary Man page Source code
print.FirstPassageTime Man page Source code
print.gamlockedTrain Man page Source code
print.gampsth Man page Source code
print.gsslockedTrain Man page Source code
print.gsslockedTrain0 Man page
print.gsspsth Man page Source code
print.gsspsth0 Man page
print.lockedTrain Man page Source code
print.repeatedTrain Man page Source code
print.spikeTrain Man page Source code
print.summary.repeatedTrain Man page Source code
psth Man page Source code
qinvgauss Man page Source code
qllogis Man page Source code
qqDuration Man page Source code
qrexp Man page Source code
quickPredict Man page Source code
raster Man page Source code
rateEvolution Man page Source code
renewalTestPlot Man page Source code
reportHTML Man page Source code
reportHTML.gam Man page Source code
reportHTML.repeatedTrain Man page Source code
reportHTML.spikeTrain Man page Source code
rexpMLE Man page Source code
rinvgauss Man page Source code
rllogis Man page Source code
rrexp Man page Source code
sPK Man page
simulate.gsspsth Man page
simulate.gsspsth0 Man page Source code
summary.CountingProcessSamplePath Man page Source code
summary.FirstPassageTime Man page Source code
summary.frt Man page Source code
summary.gamlockedTrain Man page Source code
summary.gampsth Man page Source code
summary.gsslockedTrain Man page Source code
summary.gsslockedTrain0 Man page
summary.gsspsth Man page Source code
summary.gsspsth0 Man page
summary.repeatedTrain Man page Source code
summary.spikeTrain Man page Source code
summary.transformedTrain Man page Source code
thinProcess Man page Source code
transformedTrain Man page Source code
varianceTime Man page Source code
weibullMLE Man page Source code

Files

MD5
demo
demo/pkDataSet1.R
demo/cockroachDataSet1.R
demo/Ogata1988.R
demo/00Index
demo/HMM.R
demo/gssCovProb.R
demo/cockroachDataSet2.R
src
src/crossTight.c
ChangeLog
inst
inst/doc
inst/doc/IEwSTARshort.pdf
DESCRIPTION
man
man/qqDuration.Rd
man/isiHistFit.Rd
man/mkM2U.Rd
man/ShallowShocks.Rd
man/isi.Rd
man/reportHTML.gam.Rd
man/rexpMLE.Rd
man/lockedTrain.Rd
man/summary.CountingProcessSamplePath.Rd
man/reportHTML.Rd
man/changeScale.Rd
man/jpsth.Rd
man/plot.spikeTrain.Rd
man/gsslockedTrain.Rd
man/thinProcess.Rd
man/plot.frt.Rd
man/drexp.Rd
man/print.repeatedTrain.Rd
man/dinvgauss.Rd
man/plot.transformedTrain.Rd
man/coef.durationFit.Rd
man/psth.Rd
man/STAR-package.Rd
man/frt.Rd
man/summary.transformedTrain.Rd
man/raster.Rd
man/gampsth.Rd
man/gsspsth.Rd
man/gamlockedTrain.Rd
man/rateEvolution.Rd
man/mkAR.Rd
man/df4counts.Rd
man/crossGeneral.Rd
man/mkREdf.Rd
man/mkCPSP.Rd
man/transformedTrain.Rd
man/reportHTML.spikeTrain.Rd
man/plot.ssanova.Rd
man/renewalTestPlot.Rd
man/gssObj.Rd
man/gamObj.Rd
man/acf.spikeTrain.Rd
man/quickPredict.Rd
man/as.spikeTrain.Rd
man/plot.quickPredict.Rd
man/mkGLMdf.Rd
man/reportHTML.repeatedTrain.Rd
man/brt4df.Rd
man/purkinjeCellData.Rd
man/hist.lockedTrain.Rd
man/print.spikeTrain.Rd
man/invgaussMLE.Rd
man/varianceTime.Rd
man/diff.spikeTrain.Rd
man/hgamma.Rd
man/gammaMLE.Rd
man/dllogis.Rd
man/mkDummy.Rd
man/llogisMLE.Rd
man/lnormMLE.Rd
man/cockroachALData.Rd
man/tt.Rd
man/weibullMLE.Rd
man/as.repeatedTrain.Rd
man/predictLogProb.Rd
man/compModels.Rd
data
data/mPK.rda
data/sPK.rda
data/e060824spont.rda
data/e070528spont.rda
data/ShallowShocks.rda
data/e060817spont.rda
data/CAL1S.rda
data/e060817citron.rda
data/e060817terpi.rda
data/e060824citral.rda
data/CAL2C.rda
data/CAL2S.rda
data/e070528citronellal.rda
data/e060817mix.rda
data/e060517spont.rda
data/e060517ionon.rda
data/CAL1V.rda
R
R/gssmisc.R
R/rateEvolution.R
R/mkGLMdf.R
R/summary.transformedTrain.R
R/gsslockedTrain.R
R/spikeTrainStats.R
R/transformedTrain.R
R/repeatedTrain.R
R/jpsth.R
R/gampsth.R
R/reportHTML.repeatedTrain.R
R/gamObj.R
R/gamlockedTrain.R
R/plot.transformedTrain.R
R/lockedTrain.R
R/reportHTML.gam.R
R/variableTransformation.R
R/plotEtAlquickPredict.R
R/mkDummy.R
R/frt.R
R/plot.ssanova.R
R/reportHTML.spikeTrain.R
R/CPSP.R
R/durationDist.R
R/quickPredict.R
R/predictLogProb.R
R/sim.R
R/gsspsth.R
R/brt4df.R
R/reportHTML.R
R/spikeTrain.R
R/cross.R
vignettes
vignettes/auto
vignettes/auto/IEwSTARshort.el
vignettes/IEwSTARshortBib.bib
vignettes/IEwSTARshort.Rnw
NAMESPACE
STAR documentation built on May 20, 2017, 12:55 a.m.