STAR: Spike Train Analysis with R

Functions to analyze neuronal spike trains from a single neuron or from several neurons recorded simultaneously.

AuthorChristophe Pouzat
Date of publication2012-11-09 02:58:02
MaintainerChristophe Pouzat <christophe.pouzat@gmail.com>
LicenseGPL (>= 2)
Version0.3-7
http://sites.google.com/site/spiketrainanalysiswithr

View on CRAN

Man pages

acf.spikeTrain: Auto- Covariance and -Correlation Function Estimation for...

as.repeatedTrain: Coerce and Test repeatedTrain Objects

as.spikeTrain: Coerce, Test and Extract from spikeTrain Objects

brt4df: Get Backward Recurrence Times from Data Frames Generated by...

changeScale: Change the Scales of a quickPredict Object for an Interaction...

cockroachALData: Spike Trains of several Cockroach Antennal Lobe Neurons...

coef.durationFit: Utility Functions for durationFit Objects

compModels: Compare Duration Models on a Specific Data Set

crossGeneral: Computations of Boundary Crossing Probabilities for the...

df4counts: Generates a Data Frame from a repeatedTrain Object After Time...

diff.spikeTrain: diff method for spikeTrain objects

dinvgauss: The Inverse Gaussian Distribution

dllogis: The Log Logistic Distribution

drexp: The Refractory Exponential Distribution

frt: Computes Forward Recurrence Times from Two transformedTrain...

gamlockedTrain: Function to Smooth a lockedTrain Object and Related Methods:...

gammaMLE: Maximum Likelihood Parameter Estimation of a Gamma Model with...

gamObj: Generic Function and Methods for Extracting a gamObject

gampsth: Smooth Peri Stimulus Time Histogram Related Functions and...

gsslockedTrain: Function to Smooth a lockedTrain Object and Related Methods:...

gssObj: Generic Function and Methods for Extracting a gss object

gsspsth: Smooth Peri Stimulus Time Histogram Related Functions and...

hgamma: Hazard Functions for Some Common Duration Distributions

hist.lockedTrain: Auto- and Cross-Intensity Function Estimate for Spike Trains

invgaussMLE: Maximum Likelihood Parameter Estimation of an Inverse...

isi: Get Lagged Inter Spike Intervals (ISIs) From Data Frames...

isiHistFit: ISI Histogram With Fitted Model and CI

jpsth: Related Functions and Methods for Joint-PSTHs and Joint...

llogisMLE: Maximum Likelihood Parameter Estimation of a Log Logistic...

lnormMLE: Maximum Likelihood Parameter Estimation of a Log Normal Model...

lockedTrain: Construct and Plot Time-Dependent Cross-correlation Diagram

mkAR: Generate a Data Frame With Variables Suitable For an AR Like...

mkCPSP: Counting Process Sample Paths

mkDummy: Generates a Data Frame of Dummy Variables for Use in gam

mkGLMdf: Formats (lists of) spikeTrain and repeatedTrain Objects into...

mkM2U: Makes a Smooth Function Mapping a Data Frame Variable Onto a...

mkREdf: Evaluates RateEvolutions for spikeTrain Lists and Returns...

plot.frt: Plots and Summarizes frt Objects.

plot.quickPredict: Graphical Methods for quickPredict Objects

plot.spikeTrain: Display Counting Process Associated with Single Spike Train

plot.ssanova: A Plot Method for ssanova and ssanvoa0 Objects Tailored to...

plot.transformedTrain: Plot Diagnostics for an transformedTrain Object

predictLogProb: Compute the Log Probability of a "New" Data Set Using a...

print.repeatedTrain: Print and Summary Methods for repeatedTrain Objects

print.spikeTrain: Print and Summary Methods for spikeTrain Objects

psth: Compute and Plot Peri-Stimulus Time Histogram

purkinjeCellData: Spike Trains of a Purkinje Cells (PC) Recorded in Control...

qqDuration: Quantile-Quantile Plot For Fitted Duration Distributions

quickPredict: A Simple Interface to predict method for ssanova and ssanova0...

raster: Generate a Raster Plot

rateEvolution: Evaluates and Plots a Spike Train Firing Rate's Evolution

renewalTestPlot: Non-Parametric Tests for Renewal Processes

reportHTML: Generic Function for Automatic HTML Report Generation

reportHTML.gam: Generates a Report in HTML Format from a STAR gam Object

reportHTML.repeatedTrain: Performs Basic Spike Train Analysis and Generates a Report in...

reportHTML.spikeTrain: Performs Basic Spike Train Analysis and Generates a Report in...

rexpMLE: Maximum Likelihood Parameter Estimation of a Refractory...

ShallowShocks: Shallow Shocks (M >= 6.0) in OFF Tohoku Area for 1885-1980

STAR-package: Spike Train Analysis with R

summary.CountingProcessSamplePath: Create and Explore Counting Process Sample Path Summaries

summary.transformedTrain: Summary of transformedTrain Objects

thinProcess: Simulate and Analyse Data From a Model Fitted With gss

transformedTrain: Performs Time Transformation of Spike Trains Fitted with glm...

tt: Time Transformation Using a gssanova Objet

varianceTime: Variance-Time Analysis for Spike Trains

weibullMLE: Maximum Likelihood Parameter Estimation of a Weibull Model...

Functions

acf.spikeTrain Man page
as.CPSP Man page
as.repeatedTrain Man page
as.spikeTrain Man page
brt4df Man page
CAL1S Man page
CAL1V Man page
CAL2C Man page
CAL2S Man page
changeScale Man page
coef.durationFit Man page
compModels Man page
contour.jpsth Man page
contour.quickPredict Man page
crossGeneral Man page
crossTight Man page
df4counts Man page
diff.spikeTrain Man page
dinvgauss Man page
dllogis Man page
drexp Man page
e060517ionon Man page
e060517spont Man page
e060817citron Man page
e060817mix Man page
e060817spont Man page
e060817terpi Man page
e060824citral Man page
e060824spont Man page
e070528citronellal Man page
e070528spont Man page
frt Man page
\%frt\% Man page
gamlockedTrain Man page
gammaMLE Man page
gamObj Man page
gamObj.gamlockedTrain Man page
gamObj.gampsth Man page
gampsth Man page
gsslockedTrain Man page
gsslockedTrain0 Man page
gssObj Man page
gssObj.gsslockedTrain Man page
gssObj.gsslockedTrain0 Man page
gssObj.gsspsth Man page
gssObj.gsspsth0 Man page
gsspsth Man page
gsspsth0 Man page
hgamma Man page
hinvgauss Man page
hist.lockedTrain Man page
hllogis Man page
hlnorm Man page
hrexp Man page
hweibull Man page
image.jpsth Man page
image.quickPredict Man page
invgaussMLE Man page
is.durationFit Man page
isi Man page
isiHistFit Man page
is.repeatedTrain Man page
is.spikeTrain Man page
is.varianceTime Man page
jpsth Man page
jpsth2df Man page
jsd Man page
lines.CountingProcessSamplePath Man page
lines.FirstPassageTime Man page
lines.quickPredict Man page
llogisMLE Man page
lnormMLE Man page
lockedTrain Man page
logLik.durationFit Man page
maxIntensity Man page
mkAR Man page
mkCPSP Man page
mkDummy Man page
mkGLMdf Man page
mkM2U Man page
mkMappedI Man page
mkPostSimAnalysis Man page
mkREdf Man page
mkSelf Man page
mkSimFct Man page
mkTightBMtargetFct Man page
mPK Man page
persp.jpsth Man page
persp.quickPredict Man page
pinvgauss Man page
pllogis Man page
plot.CountingProcessSamplePath Man page
plot.CountingProcessSamplePath.summary Man page
plot.FirstPassageTime Man page
plot.frt Man page
plot.gamlockedTrain Man page
plot.gampsth Man page
plot.gsslockedTrain Man page
plot.gsslockedTrain0 Man page
plot.gsspsth Man page
plot.gsspsth0 Man page
plot.hist.lockedTrain Man page
plot.lockedTrain Man page
plot.psth Man page
plot.quickPredict Man page
plot.rateEvolution Man page
plot.repeatedTrain Man page
plot.spikeTrain Man page
plot.ssanova Man page
plot.ssanova0 Man page
plot.transformedTrain Man page
plot.varianceTime Man page
predictLogProb Man page
prexp Man page
print.CountingProcessSamplePath Man page
print.CountingProcessSamplePath.summary Man page
print.FirstPassageTime Man page
print.gamlockedTrain Man page
print.gampsth Man page
print.gsslockedTrain Man page
print.gsslockedTrain0 Man page
print.gsspsth Man page
print.gsspsth0 Man page
print.lockedTrain Man page
print.repeatedTrain Man page
print.spikeTrain Man page
print.summary.repeatedTrain Man page
psth Man page
qinvgauss Man page
qllogis Man page
\%qp\% Man page
qqDuration Man page
qrexp Man page
quickPredict Man page
raster Man page
rateEvolution Man page
renewalTestPlot Man page
reportHTML Man page
reportHTML.gam Man page
reportHTML.repeatedTrain Man page
reportHTML.spikeTrain Man page
rexpMLE Man page
rinvgauss Man page
rllogis Man page
rrexp Man page
ShallowShocks Man page
simulate.gsspsth Man page
simulate.gsspsth0 Man page
[.spikeTrain Man page
sPK Man page
STAR Man page
STAR-package Man page
summary.CountingProcessSamplePath Man page
summary.FirstPassageTime Man page
summary.frt Man page
summary.gamlockedTrain Man page
summary.gampsth Man page
summary.gsslockedTrain Man page
summary.gsslockedTrain0 Man page
summary.gsspsth Man page
summary.gsspsth0 Man page
summary.repeatedTrain Man page
summary.spikeTrain Man page
summary.transformedTrain Man page
thinProcess Man page
transformedTrain Man page
\%tt\% Man page
varianceTime Man page
weibullMLE Man page

Files

STAR
STAR/MD5
STAR/demo
STAR/demo/pkDataSet1.R
STAR/demo/cockroachDataSet1.R
STAR/demo/Ogata1988.R
STAR/demo/00Index
STAR/demo/HMM.R
STAR/demo/gssCovProb.R
STAR/demo/cockroachDataSet2.R
STAR/src
STAR/src/crossTight.c
STAR/ChangeLog
STAR/inst
STAR/inst/doc
STAR/inst/doc/IEwSTARshort.pdf
STAR/DESCRIPTION
STAR/man
STAR/man/qqDuration.Rd STAR/man/isiHistFit.Rd STAR/man/mkM2U.Rd STAR/man/ShallowShocks.Rd STAR/man/isi.Rd STAR/man/reportHTML.gam.Rd STAR/man/rexpMLE.Rd STAR/man/lockedTrain.Rd STAR/man/summary.CountingProcessSamplePath.Rd STAR/man/reportHTML.Rd STAR/man/changeScale.Rd STAR/man/jpsth.Rd STAR/man/plot.spikeTrain.Rd STAR/man/gsslockedTrain.Rd STAR/man/thinProcess.Rd STAR/man/plot.frt.Rd STAR/man/drexp.Rd STAR/man/print.repeatedTrain.Rd STAR/man/dinvgauss.Rd STAR/man/plot.transformedTrain.Rd STAR/man/coef.durationFit.Rd STAR/man/psth.Rd STAR/man/STAR-package.Rd STAR/man/frt.Rd STAR/man/summary.transformedTrain.Rd STAR/man/raster.Rd STAR/man/gampsth.Rd STAR/man/gsspsth.Rd STAR/man/gamlockedTrain.Rd STAR/man/rateEvolution.Rd STAR/man/mkAR.Rd STAR/man/df4counts.Rd STAR/man/crossGeneral.Rd STAR/man/mkREdf.Rd STAR/man/mkCPSP.Rd STAR/man/transformedTrain.Rd STAR/man/reportHTML.spikeTrain.Rd STAR/man/plot.ssanova.Rd STAR/man/renewalTestPlot.Rd STAR/man/gssObj.Rd STAR/man/gamObj.Rd STAR/man/acf.spikeTrain.Rd STAR/man/quickPredict.Rd STAR/man/as.spikeTrain.Rd STAR/man/plot.quickPredict.Rd STAR/man/mkGLMdf.Rd STAR/man/reportHTML.repeatedTrain.Rd STAR/man/brt4df.Rd STAR/man/purkinjeCellData.Rd STAR/man/hist.lockedTrain.Rd STAR/man/print.spikeTrain.Rd STAR/man/invgaussMLE.Rd STAR/man/varianceTime.Rd STAR/man/diff.spikeTrain.Rd STAR/man/hgamma.Rd STAR/man/gammaMLE.Rd STAR/man/dllogis.Rd STAR/man/mkDummy.Rd STAR/man/llogisMLE.Rd STAR/man/lnormMLE.Rd STAR/man/cockroachALData.Rd STAR/man/tt.Rd STAR/man/weibullMLE.Rd STAR/man/as.repeatedTrain.Rd STAR/man/predictLogProb.Rd STAR/man/compModels.Rd
STAR/data
STAR/data/mPK.rda
STAR/data/sPK.rda
STAR/data/e060824spont.rda
STAR/data/e070528spont.rda
STAR/data/ShallowShocks.rda
STAR/data/e060817spont.rda
STAR/data/CAL1S.rda
STAR/data/e060817citron.rda
STAR/data/e060817terpi.rda
STAR/data/e060824citral.rda
STAR/data/CAL2C.rda
STAR/data/CAL2S.rda
STAR/data/e070528citronellal.rda
STAR/data/e060817mix.rda
STAR/data/e060517spont.rda
STAR/data/e060517ionon.rda
STAR/data/CAL1V.rda
STAR/R
STAR/R/gssmisc.R STAR/R/rateEvolution.R STAR/R/mkGLMdf.R STAR/R/summary.transformedTrain.R STAR/R/gsslockedTrain.R STAR/R/spikeTrainStats.R STAR/R/transformedTrain.R STAR/R/repeatedTrain.R STAR/R/jpsth.R STAR/R/gampsth.R STAR/R/reportHTML.repeatedTrain.R STAR/R/gamObj.R STAR/R/gamlockedTrain.R STAR/R/plot.transformedTrain.R STAR/R/lockedTrain.R STAR/R/reportHTML.gam.R STAR/R/variableTransformation.R STAR/R/plotEtAlquickPredict.R STAR/R/mkDummy.R STAR/R/frt.R STAR/R/plot.ssanova.R STAR/R/reportHTML.spikeTrain.R STAR/R/CPSP.R STAR/R/durationDist.R STAR/R/quickPredict.R STAR/R/predictLogProb.R STAR/R/sim.R STAR/R/gsspsth.R STAR/R/brt4df.R STAR/R/reportHTML.R STAR/R/spikeTrain.R STAR/R/cross.R
STAR/vignettes
STAR/vignettes/auto
STAR/vignettes/auto/IEwSTARshort.el
STAR/vignettes/IEwSTARshortBib.bib
STAR/vignettes/IEwSTARshort.Rnw
STAR/NAMESPACE

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