Global functions | |
---|---|
HLA_and_tree_inner | Source code |
KD | Source code |
SeqFeatR_GUI | Man page |
about | Source code |
add_correction | Source code |
add_correction_cm | Source code |
addtolist | Source code |
assocpair | Man page |
assocpairfeat | Man page |
assocpoint | Man page |
assocpointhierarchical | Man page |
assocpointpair | Man page |
assoctuple | Man page |
attach.config | Source code |
bayes_fac | Source code |
both_are_different | Source code |
calculate_co_mut | Source code |
calculate_co_mut_graphics | Source code |
calculate_co_mut_graphics_both | Source code |
calculate_founder | Source code |
calculate_length | Source code Source code Source code |
calculate_pos_epi | Source code |
calculate_pos_epi_further | Source code |
calculate_q_value | Source code |
calculate_qvalues_inner | Source code |
check_K | Source code |
check_allels | Source code |
check_bayes_factor | Source code |
check_dna | Source code |
check_for_pos_epi_mut_core_inner | Source code |
check_ident | Source code |
check_offset | Source code |
check_phylo | Source code |
cm_wo_create_mini_table | Source code |
cm_wo_inside_main | Source code |
cm_wo_make_HLA_types_array | Source code |
cm_wo_make_char_array | Source code |
cm_wo_make_pair_array | Source code |
comparewithancestral | Man page |
create_ancestral_sequences | Source code |
create_correct_FASTA_input | Source code Source code Source code Source code Source code Source code Source code Source code |
create_mini_table_tr | Source code |
create_pos_epi_csv | Source code Source code |
create_pos_epi_plot | Source code Source code |
create_sequence_graphic_G | Source code |
create_sequence_graphic_inner | Source code |
easyGregexpr | Source code Source code |
find.neqzero | Source code Source code Source code Source code Source code |
find_epitope_in_given_sequence | Source code Source code |
find_possible_epitopes_inner | Source code |
find_possible_epitopes_inner_hierach | Source code |
find_smallest_cluster_number | Source code Source code |
founder_eliminator_main_inner | Source code |
foundereffectfinder | Man page |
generate_example_config | Source code |
generate_example_config_wo_HLA | Source code |
generate_example_fasta | Source code |
get.threshold.f.fisher.pair | Source code |
getFASTAfile | Source code |
get_10_based | Source code Source code |
get_AA_from_consensus | Source code |
get_ancestral_for_this_position | Source code |
get_freqs | Source code |
get_freqs_inner | Source code |
get_identifier | Source code |
get_intres | Source code |
get_label_right | Source code |
get_original_sequence | Source code |
get_original_sequence_ph | Source code |
get_p_fish | Source code |
get_seqs_for_certain_position | Source code |
get_shared_mutations_inside | Source code |
getcsvfile | Source code |
getfreqs | Man page |
getnexusfile | Source code |
has_C_allel | Source code |
inside_main | Source code |
inside_main_tr | Source code |
mai | Source code |
make_HLA_types_array | Source code |
make_array | Source code |
make_char_array | Source code Source code |
make_fisher_test | Source code |
make_pair_array | Source code |
make_spare_room | Source code |
make_special_pair_array | Source code Source code |
open_tutorial | Source code |
orPlot | Man page |
qvalues | Man page |
read.config | Source code |
remove.zeroes | Source code Source code Source code Source code Source code Source code Source code |
remove_only_ones | Source code |
reverselog_trans | Source code |
rewrite_shared_mutations | Source code |
rewrite_shared_mutations_result_inner | Source code |
rewritetuple | Man page |
rotate | Source code |
save_config | Source code |
shared_mutations | Source code |
small_manhattan | Source code |
smallmanhattan | Man page Source code |
smallmanhattan_inner | Source code |
tartan | Man page |
test_for_comutation_inner | Source code |
test_for_comutation_only_graphics_inner | Source code |
test_for_comutation_only_graphics_wo_allels_2_inner | Source code |
test_for_comutation_only_graphics_wo_allels_inner | Source code |
test_for_comutation_without_allel_inner | Source code |
test_for_occurence | Source code Source code |
test_if_in_one_cluster | Source code Source code |
test_if_same_branch | Source code |
test_if_same_subtree | Source code |
two_wo_set_input_file_known_sequences | Source code |
visualizepair | Man page |
visualizepairfeat | Man page |
volcanoplot | Man page |
volcanoplot_inner | Source code |
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