API for SeqFeatR
A Tool to Associate FASTA Sequences and Features

Global functions
HLA_and_tree_inner Source code
KD Source code
SeqFeatR_GUI Man page
about Source code
add_correction Source code
add_correction_cm Source code
addtolist Source code
assocpair Man page
assocpairfeat Man page
assocpoint Man page
assocpointhierarchical Man page
assocpointpair Man page
assoctuple Man page
attach.config Source code
bayes_fac Source code
both_are_different Source code
calculate_co_mut Source code
calculate_co_mut_graphics Source code
calculate_co_mut_graphics_both Source code
calculate_founder Source code
calculate_length Source code Source code Source code
calculate_pos_epi Source code
calculate_pos_epi_further Source code
calculate_q_value Source code
calculate_qvalues_inner Source code
check_K Source code
check_allels Source code
check_bayes_factor Source code
check_dna Source code
check_for_pos_epi_mut_core_inner Source code
check_ident Source code
check_offset Source code
check_phylo Source code
cm_wo_create_mini_table Source code
cm_wo_inside_main Source code
cm_wo_main Source code
cm_wo_make_HLA_types_array Source code
cm_wo_make_char_array Source code
cm_wo_make_pair_array Source code
comparewithancestral Man page
create_ancestral_sequences Source code
create_correct_FASTA_input Source code Source code Source code Source code Source code Source code Source code Source code
create_mini_table_tr Source code
create_pos_epi_csv Source code Source code
create_pos_epi_plot Source code Source code
create_sequence_graphic_G Source code
create_sequence_graphic_inner Source code
easyGregexpr Source code Source code
find.neqzero Source code Source code Source code Source code Source code
find_epitope_in_given_sequence Source code Source code
find_possible_epitopes_inner Source code
find_possible_epitopes_inner_hierach Source code
find_smallest_cluster_number Source code Source code
founder_eliminator_main_inner Source code
foundereffectfinder Man page
generate_example_config Source code
generate_example_config_wo_HLA Source code
generate_example_fasta Source code
get.threshold.f.fisher.pair Source code
getFASTAfile Source code
get_10_based Source code Source code
get_AA_from_consensus Source code
get_ancestral_for_this_position Source code
get_freqs Source code
get_freqs_inner Source code
get_identifier Source code
get_intres Source code
get_label_right Source code
get_original_sequence Source code
get_original_sequence_ph Source code
get_p_fish Source code
get_seqs_for_certain_position Source code
get_shared_mutations_inside Source code
getcsvfile Source code
getfreqs Man page
getnexusfile Source code
inside_main Source code
inside_main_tr Source code
mai Source code
main Source code
make_HLA_types_array Source code
make_array Source code
make_char_array Source code Source code
make_fisher_test Source code
make_pair_array Source code
make_spare_room Source code
make_special_pair_array Source code Source code
open_tutorial Source code
orPlot Man page
qvalues Man page
read.config Source code
remove.zeroes Source code Source code Source code Source code Source code Source code Source code
remove_only_ones Source code
reverselog_trans Source code
rewrite_shared_mutations Source code
rewrite_shared_mutations_result_inner Source code
rewritetuple Man page
rotate Source code
save_config Source code
shared_mutations Source code
small_manhattan Source code
smallmanhattan Man page Source code
smallmanhattan_inner Source code
tartan Man page
test_for_comutation_inner Source code
test_for_comutation_only_graphics_inner Source code
test_for_comutation_only_graphics_wo_allels_2_inner Source code
test_for_comutation_only_graphics_wo_allels_inner Source code
test_for_comutation_without_allel_inner Source code
test_for_occurence Source code Source code
test_if_in_one_cluster Source code Source code
test_if_same_branch Source code
test_if_same_subtree Source code
two_wo_set_input_file_known_sequences Source code
visualizepair Man page
visualizepairfeat Man page
volcanoplot Man page
volcanoplot_inner Source code
SeqFeatR documentation built on May 18, 2018, 5:04 p.m.