rewritetuple: Rewrite result from SeqFeatRs assoctuple
In SeqFeatR: A Tool to Associate FASTA Sequences and Features

Description Usage Arguments Details Author(s) See Also Examples

Function to reqrite output from SeqFeatRs assoctuple into an usable form for SeqFeatRs tartan.

1 2	rewritetuple(path_to_file_assoctuple_csv_result = NULL, save_name_csv, first_position, second_position, value_position, separator, threshold)

`path_to_file_assoctuple_csv_result`	csv file with results from SeqFeatRs assoctuple function. For reference see example file.
`save_name_csv`	name of file to which results are saved in csv format.
`first_position`	column position of first sequence position.
`second_position`	column position of second sequence position.
`value_position`	column position of p-value.
`separator`	separator of csv input file (usually ";", ",", "\t").
`threshold`	p-value threshold, below which data is to be included in result.

Extracts the two sequence positions and p-value if it is below the threshold and generates output csv file for SeqFeatRs tartan with these values.

Bettina Budeus

assoctuple

#Input file
assoctuple_result <- system.file("extdata", "assoctuple_result.csv", package="SeqFeatR")

#Usage
rewritetuple(
	path_to_file_assoctuple_csv_result=assoctuple_result, 
	save_name_csv="rewritetuple_result.csv", 
	first_position=3, 
	second_position=4, 
	value_position=10, 
	separator="\t", 
	threshold=0.1)