Description Usage Arguments Details Note Author(s) See Also Examples
Creates a pdf output with a visualization of the results from the analysis from SeqFeatRs assocpair function.
1 2 | visualizepair(path_to_file_assocpair_csv_result = NULL,
save_name_pdf, significance_level = 0.01)
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path_to_file_assocpair_csv_result |
csv file with results from SeqFeatRs assocpair function. For reference see example file. |
save_name_pdf |
name of file to which results are saved in pdf format. |
significance_level |
significance value below which the results of the analysis are considered to be relevant enough to be plotted. |
An output is created with a sequence position versus sequence position graphic. Every dot color(one position with the other position) is based on its p-value. The color code is on the right side. In contrast to visualizepairfeat, no feature information will be used.
Only use files generated from SeqFeatRs assocpair function.
Bettina Budeus
1 2 3 4 5 6 7 8 | #Input file
assocpair_result <- system.file("extdata", "assocpair_results.csv", package="SeqFeatR")
#Usage
visualizepair(
path_to_file_assocpair_csv_result=assocpair_result,
save_name_pdf="vispair_plot.pdf",
significance_level=0.05)
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