Man pages for SeqFeatR
A Tool to Associate FASTA Sequences and Features

assocpairFinding pairs of alignment positions that jointly mutate
assocpairfeatFinding pairs of sequence alignment positions associated with...
assocpointSearches for associations of single alignment positions with...
assocpointhierarchicalSearches for associations of single alignment positions with...
assocpointpairCompare results of SeqFeatRs assocpoint with SeqFeatRs...
assoctupleSearches for associations of a tuple of alignment positions...
comparewithancestralCompares ancestral sequence with sequence alignment
foundereffectfinderTries to identify a founder effect in results from SeqFeatRs...
getfreqsGet frequencies for amino acids/nucleotides in alignment...
orPlotVisualize odds ratios and p-values from SeqFeatRs assocpoint
q-valuesCalculate q-values from p-values
rewritetupleRewrite result from SeqFeatRs assoctuple
SeqFeatR_GUIGUI for SeqFeatR
smallmanhattanA small version of manhattan plot
tartanVisualize association of mutation pairs and features from two...
visualizepairVisualize pairs of alignment positions that jointly mutate
visualizepairfeatVisualize pairs of sequence alignment positions associated...
volcanoplotCreate volcano plot
SeqFeatR documentation built on May 18, 2018, 5:04 p.m.