Files in SeqFeatR
A Tool to Associate FASTA Sequences and Features
MD5
NEWS
DESCRIPTION
NAMESPACE
INSTALL
inst/CITATION
inst/doc/SeqFeatR_tutorial.Rnw
inst/doc/SeqFeatR_tutorial.pdf
inst/extdata/assocpoint_results.csv
inst/extdata/Example_epitopes_aa.csv
inst/extdata/config.cfg
inst/extdata/Example_nt.fasta
inst/extdata/Example_Consensus_nt.fasta
inst/extdata/assocpair_results.csv
inst/extdata/shared_mutations_result_for_tartan.csv
inst/extdata/Example_HLA_binding_motifs_nt.csv
inst/extdata/assocpoint_results_nt.csv
inst/extdata/Example_reference_aa.fasta
inst/extdata/Example_Consensus_aa.fasta
inst/extdata/tart_1.csv
inst/extdata/tart_2.csv
inst/extdata/assoctuple_result.csv
inst/extdata/Example_tree.nh
inst/extdata/assocpairfeat_results.csv
inst/extdata/Example_HLA_binding_motifs_aa.csv
inst/extdata/Example_aa.fasta
inst/extdata/Example_model_for_bayes.txt
inst/extdata/Example_aa_for_cwa.fasta
inst/extdata/Example_reference_nt.fasta
inst/extdata/Example_epitopes_nt.csv
vignettes/OR_new.pdf
vignettes/Example_HLA_position.png
vignettes/log.pdf
vignettes/tart.pdf_tex
vignettes/phylo_ex.pdf_tex
vignettes/phylo_ex.svg
vignettes/tart.pdf
vignettes/phylo_ex.pdf
vignettes/SeqFeatR_tutorial.Rnw
vignettes/screenshotHLA.png
vignettes/log.pdf_tex
vignettes/OR_new.pdf_tex
R/smallmanhattan.R
R/volcanoplot.R
R/rewritetuple.R
R/assocpoint.R
R/comparewithancestral.R
R/SeqFeatR_GUI.R
R/getfreqs.R
R/foundereffectfinder.R
R/visualizepair.R
R/assoctuple.R
R/tartan.R
R/visualizepairfeat.R
R/assocpairfeat.R
R/assocpair.R
R/assocpointhierarchical.R
R/assocpointpair.R
R/q-values.R
R/orPlot.R
man/assocpairfeat.Rd
man/volcanoplot.Rd
man/assocpair.Rd
man/SeqFeatR_GUI.Rd
man/getfreqs.Rd
man/foundereffectfinder.Rd
man/orPlot.Rd
man/assoctuple.Rd
man/assocpoint.Rd
man/assocpointhierarchical.Rd
man/rewritetuple.Rd
man/visualizepairfeat.Rd
man/visualizepair.Rd
man/smallmanhattan.Rd
man/q-values.Rd
man/assocpointpair.Rd
man/comparewithancestral.Rd
man/tartan.Rd
build/vignette.rds
