Man pages for SeqFeatR
A Tool to Associate FASTA Sequences and Features
| assocpair | Finding pairs of alignment positions that jointly mutate |
| assocpairfeat | Finding pairs of sequence alignment positions associated with... |
| assocpoint | Searches for associations of single alignment positions with... |
| assocpointhierarchical | Searches for associations of single alignment positions with... |
| assocpointpair | Compare results of SeqFeatRs assocpoint with SeqFeatRs... |
| assoctuple | Searches for associations of a tuple of alignment positions... |
| comparewithancestral | Compares ancestral sequence with sequence alignment |
| foundereffectfinder | Tries to identify a founder effect in results from SeqFeatRs... |
| getfreqs | Get frequencies for amino acids/nucleotides in alignment... |
| orPlot | Visualize odds ratios and p-values from SeqFeatRs assocpoint |
| q-values | Calculate q-values from p-values |
| rewritetuple | Rewrite result from SeqFeatRs assoctuple |
| SeqFeatR_GUI | GUI for SeqFeatR |
| smallmanhattan | A small version of manhattan plot |
| tartan | Visualize association of mutation pairs and features from two... |
| visualizepair | Visualize pairs of alignment positions that jointly mutate |
| visualizepairfeat | Visualize pairs of sequence alignment positions associated... |
| volcanoplot | Create volcano plot |
