Files in SerolyzeR
Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/parser.R R/parser-layout.R R/classes-plate_builder.R R/config.R R/classes-model.R R/plots-levey_jennings.R R/process-dir.R R/process-plate.R R/process-file.R R/get-nmfi.R R/generate_report.R R/plots-plate.R R/classes-plate.R R/plots-mfi.R R/parser-xponent.R R/helpers.R R/parser-intelliflex.R R/plots-standard_curve.R inst/doc/example_script.Rmd
inst/doc/example_script.html
inst/doc/example_script.R
inst/extdata/CovidOISExPONTENT_CO.csv
inst/extdata/CovidOISExPONTENT_missing_rows.csv
inst/extdata/random_no_standard_curve.csv
inst/extdata/CovidOISExPONTENT_CO_with_holes_layout.xlsx
inst/extdata/random_intelliflex.csv
inst/extdata/random_broken_colB.csv
inst/extdata/random.csv
inst/extdata/CovidOISExPONTENT_layout.xlsx
inst/extdata/CovidOISExPONTENT.csv
inst/extdata/CovidOISExPONTENT_layout.csv
inst/extdata/random2.csv
inst/extdata/CovidOISExPONTENT_CO_layout.xlsx
inst/extdata/CovidOISExPONTENT_CO_with_holes.csv
inst/extdata/CovidOISExPONTENT_CO_reduced.csv
inst/extdata/random_layout.xlsx
inst/extdata/random_layout_no_standard_curve.xlsx
inst/extdata/multiplate_reallife_reduced/IGG_CO_1_xponent_layout.xlsx
inst/extdata/multiplate_reallife_reduced/IGG_CO_3_xponent_layout.xlsx
inst/extdata/multiplate_reallife_reduced/IGG_CO_3_xponent.csv
inst/extdata/multiplate_reallife_reduced/IGG_CO_2_xponent.csv
inst/extdata/multiplate_reallife_reduced/IGG_CO_1_xponent.csv
inst/extdata/multiplate_reallife_reduced/IGG_CO_2_xponent_layout.xlsx
inst/extdata/multiplate_lite/CovidOISExPONTENT.csv
inst/extdata/multiplate_lite/CovidOISExPONTENT_layout.csv
inst/extdata/multiplate_lite/CovidOISExPONTENT2_layout.csv
inst/extdata/multiplate_lite/CovidOISExPONTENT2.csv
inst/extdata/multiplate_mock/random_xponent.csv
inst/extdata/multiplate_mock/random_xponent_layout.xlsx
inst/extdata/multiplate_mock/other/random2_xponent.csv
inst/extdata/multiplate_mock/other/random2_xponent_layout.xlsx
inst/extdata/external/Chul_TotalIgG_2.csv
inst/extdata/external/Chul_IgG3_1.csv
inst/extdata/external/pone.0187901.s001.csv
inst/extdata/external/New_Batch_6_20160309_174224.csv
inst/extdata/external/New_Batch_14_20140513_082522.csv
inst/img/overview.png
inst/img/96_well_plate.png
inst/img/report_warnings.png
inst/templates/levey_jennings_report_template.Rmd inst/templates/plate_report_template.Rmd
build/vignette.rds
tests/testthat.R tests/testthat/test-process-plate.R tests/testthat/test-plots-plate.R tests/testthat/test-plate_builder.R tests/testthat/test-plate.R tests/testthat/test-plots-standard_curve.R tests/testthat/test-parser-layout.R tests/testthat/test-get-nmfi.R tests/testthat/test-model.R tests/testthat/test-helpers.R tests/testthat/test-parser.R tests/testthat/test-generate_report.R tests/testthat/test-parser-xponent.R tests/testthat/test-plots-mfi.R tests/testthat/test-plots-levey_jennings.R tests/testthat/test-integration.R tests/testthat/test-process-dir.R vignettes/example_script.Rmd man/is.decreasing.Rd man/plot_levey_jennings.Rd man/plot_counts.Rd man/handle_high_dose_hook.Rd man/create_vector_without_holes.Rd man/dilution_to_rau.Rd man/read_xponent_format.Rd man/is_mba_data_file.Rd man/is_outlier.Rd man/is_valid_data_type.Rd man/handle_datetime.Rd man/Plate.Rd man/extract_sample_names_from_layout.Rd man/check_path_equal.Rd man/extract_dilution_from_names.Rd man/translate_sample_names_to_sample_types.Rd man/get_join_value.Rd man/read_luminex_data.Rd man/extract_dilutions_from_layout.Rd man/Model.Rd man/PlateBuilder.Rd man/is_valid_sample_type.Rd man/process_file.Rd man/plot_plate.Rd man/is.str.number.Rd man/verify_numeric_join.Rd man/get_location_matrix.Rd man/validate_filepath_and_output_dir.Rd man/is_mba_format.Rd man/find_layout_file.Rd man/verify_character_join.Rd man/is.scalar.Rd man/remove_empty_lists.Rd man/plot_standard_curve_analyte_with_model.Rd man/plot_standard_curve_stacked.Rd man/clamp.Rd man/verbose_cat.Rd man/sort_list_by.Rd man/read_layout_data.Rd man/format_dilutions.Rd man/plot_layout.Rd man/plot_standard_curve_analyte.Rd man/predict.Model.Rd man/process_dir.Rd man/merge_dataframes.Rd man/generate_plate_report.Rd man/read_intelliflex_format.Rd man/select_columns.Rd man/convert_dilutions_to_numeric.Rd man/plot_mfi_for_analyte.Rd man/generate_levey_jennings_report.Rd man/get_output_dir.Rd man/detect_mba_format.Rd man/get_nmfi.Rd man/process_plate.Rd man/create_standard_curve_model_analyte.Rd man/plot_standard_curve_thumbnail.Rd
SerolyzeR documentation built on April 12, 2025, 2:11 a.m.