cal_conn: cal_conn This function calculates the first 3 order...

In SiFINeT: Single Cell Feature Identification with Network Topology

cal_conn This function calculates the first 3 order connectivities for each gene and returns the list of vectors of connectivities.

Description

cal_conn This function calculates the first 3 order connectivities for each gene and returns the list of vectors of connectivities.

Usage

cal_conn(data, thres = 3, m = 10L, abso = 1L, niter = 100L)

Arguments

data	Input gene by gene coexpression matrix
thres	Gene pairs with coexpression exceed thres would be assigned an edge between them in the coexpression network
m	Sample size used for the calculation of 3rd order connectivities
abso	Whether to calculate connectivities in absolute network (TRUE) or positive network (FALSE)
niter	Number of sample used for the calculation of 3rd order connectivities

Value

List of connectivities C1, C2, and C3 ' @export

Author(s)

Qi Gao

SiFINeT documentation built on April 3, 2025, 9:30 p.m.