create_SiFINeT_object: create_SiFINeT_object

In SiFINeT: Single Cell Feature Identification with Network Topology

create_SiFINeT_object

Description

The function classifies count data based on thresholds defined by quantile regression

Usage

create_SiFINeT_object(
  counts,
  gene.name = NULL,
  meta.data = NULL,
  data.name = NULL,
  sparse = FALSE,
  rowfeature = TRUE
)

Arguments

counts	count matrix
gene.name	name of the features
meta.data	data.frame of meta data
data.name	name of dataset
sparse	whether the count matrix should be analyzed as sparse matrix
rowfeature	whether the count matrix is feature (row) by cell (column)

Value

a SiFINeT object

SiFINeT documentation built on April 3, 2025, 9:30 p.m.