intercorr_cat_pois: Calculate Intermediate MVN Correlation for Ordinal - Poisson...

Description Usage Arguments Value References See Also

View source: R/intercorr_cat_pois.R


This function calculates a k_cat x k_pois intermediate matrix of correlations for the k_cat ordinal (r >= 2 categories) and k_pois Poisson variables required to produce the target correlations in rho_cat_pois. It extends the method of Amatya & Demirtas (2015, doi: 10.1080/00949655.2014.953534) to ordinal - Poisson pairs and allows for regular or zero-inflated Poisson variables. Here, the intermediate correlation between Z1 and Z2 (where Z1 is the standard normal variable discretized to produce an ordinal variable Y1, and Z2 is the standard normal variable used to generate a Poisson variable via the inverse CDF method) is calculated by dividing the target correlation by a correction factor. The correction factor is the product of the upper Frechet-Hoeffding bound on the correlation between a Poisson variable and the normal variable used to generate it and a simulated GSC upper bound on the correlation between an ordinal variable and the normal variable used to generate it (see Demirtas & Hedeker, 2011, doi: 10.1198/tast.2011.10090). The function is used in intercorr and corrvar. This function would not ordinarily be called by the user.


intercorr_cat_pois(rho_cat_pois = NULL, marginal = list(), lam = NULL,
  p_zip = 0, nrand = 100000, seed = 1234)



a k_cat x k_pois matrix of target correlations among ordinal and Poisson variables; the Poisson variables should be ordered 1st regular, 2nd zero-inflated


a list of length equal to k_cat; the i-th element is a vector of the cumulative probabilities defining the marginal distribution of the i-th variable; if the variable can take r values, the vector will contain r - 1 probabilities (the r-th is assumed to be 1)


a vector of lambda (mean > 0) constants for the regular and zero-inflated Poisson variables (see stats::dpois); the order should be 1st regular Poisson variables, 2nd zero-inflated Poisson variables


a vector of probabilities of structural zeros (not including zeros from the Poisson distribution) for the zero-inflated Poisson variables (see VGAM::dzipois); if p_zip = 0, Y_{pois} has a regular Poisson distribution; if p_zip is in (0, 1), Y_{pois} has a zero-inflated Poisson distribution; if p_zip is in (-(exp(lam) - 1)^(-1), 0), Y_{pois} has a zero-deflated Poisson distribution and p_zip is not a probability; if p_zip = -(exp(lam) - 1)^(-1), Y_{pois} has a positive-Poisson distribution (see VGAM::dpospois); if length(p_zip) < length(lam), the missing values are set to 0 (and ordered 1st)


the number of random numbers to generate in calculating the bound (default = 10000)


the seed used in random number generation (default = 1234)


a k_cat x k_pois matrix whose rows represent the k_cat ordinal variables and columns represent the k_pois Poisson variables


Amatya A & Demirtas H (2015). Simultaneous generation of multivariate mixed data with Poisson and normal marginals. Journal of Statistical Computation and Simulation, 85(15):3129-39. doi: 10.1080/00949655.2014.953534.

Demirtas H & Hedeker D (2011). A practical way for computing approximate lower and upper correlation bounds. American Statistician, 65(2):104-109. doi: 10.1198/tast.2011.10090.

Frechet M (1951). Sur les tableaux de correlation dont les marges sont donnees. Ann. l'Univ. Lyon SectA, 14:53-77.

Hoeffding W. Scale-invariant correlation theory. In: Fisher NI, Sen PK, editors. The collected works of Wassily Hoeffding. New York: Springer-Verlag; 1994. p. 57-107.

Yahav I & Shmueli G (2012). On Generating Multivariate Poisson Data in Management Science Applications. Applied Stochastic Models in Business and Industry, 28(1):91-102. doi: 10.1002/asmb.901.

Yee TW (2018). VGAM: Vector Generalized Linear and Additive Models. R package version 1.0-5.

See Also

intercorr, corrvar

SimCorrMix documentation built on May 2, 2019, 1:24 p.m.