RNV.graph.double.at.eq: Graph of e and RNV in relation to A at equilibrium

In SimEvolEnzCons: Simulation of Evolution of Enzyme Under Constraints

Description

Plot of RNV size and relative concentrations in relation to activities at equilibrium

Usage

RNV.graph.double.at.eq(list_eq,posi.legend="topleft",add.title=TRUE,
cex.lab=1,mar.lab=2.5,enz.lab=FALSE,...)

Arguments

list_eq	Output of function RNV.size.at.equilibr: list_eq$A: Numeric vector of activities (length n) list_eq$RNV_size: Numeric matrix of n column and 2 rows. Only first row will be used, corresponding to near RNV (small mutations). list_eq$e_eq: Numeric vector of equilibrium (length n)
posi.legend	Character string. Where would you put legend? See parameter x in function legend. If NULL, legend will not appear.
add.title	Logical. Add a title to the plot?
cex.lab	Numeric. Size of axis label.
mar.lab	Numeric. Distance of label from axis.
enz.lab	Logical. Add enzyme name on graph?
...	Arguments to be passed to plot function, such cex or cex.lab

Details

list_eq$A, list_eq$RNV_size[1,] and list_eq$e_eq are binded in a data.frame of n rows (one by enzyme) and three columns (A, RNV and e), then ordered according to A.

Title (option add.title=TRUE) is "Comparing e and RNV at equilibrium".

Value

Invisible data.frame of n rows (one by enzyme) and three columns ($A, $RNV and $e).

See Also

See RNV.size.at.equilibr to compute RNV.

Examples

list_eq <- RNV.size.at.equilibr(20,"Comp",1000,Etot_0=100,show.plot=FALSE)
RNV.graph.double.at.eq(list_eq)

SimEvolEnzCons documentation built on Oct. 29, 2021, 1:07 a.m.