Man pages for SimInf
A Framework for Data-Driven Stochastic Disease Spread Simulations

boxplot-SimInf_model-methodBox plot of number of individuals in each compartment
C_codeExtract the C code from a 'SimInf_model' object
distance_matrixCreate a distance matrix between nodes for spatial models
eventsExtract the events from a 'SimInf_model' object
events_SEIRExample data to initialize events for the 'SEIR' model
events_SIRExample data to initialize events for the 'SIR' model
events_SISeExample data to initialize events for the 'SISe' model
events_SISe3Example data to initialize events for the 'SISe3' model
gdataExtract global data from a 'SimInf_model' object
gdata-setSet a global data parameter for a 'SimInf_model' object
indegreeDetermine in-degree for each node in a model
ldataExtract local data from a node
mparseModel parser to define new models to run in 'SimInf'
NnExtract number of nodes in a model
nodesExample data with spatial distribution of nodes
outdegreeDetermine out-degree for each node in a model
package_skeletonCreate a package skeleton from a 'SimInf_model'
pairs-SimInf_model-methodScatterplot of number of individuals in each compartment
plotDisplay the outcome from a simulated trajectory
plot-SimInf_events-methodDisplay the distribution of scheduled events over time
prevalenceCalculate prevalence from a model object with trajectory data
runRun the SimInf stochastic simulation algorithm
run_outerRun 'SimInf_model' on scaled parameters
SEIRCreate an SEIR model
SEIR-classDefinition of the 'SEIR' model
select_matrixExtract the select matrix from a 'SimInf_model' object
select_matrix-setSet the select matrix for a 'SimInf_model' object
shift_matrixExtract the shift matrix from a 'SimInf_model' object
shift_matrix-setSet the shift matrix for a 'SimInf_model' object
show-SimInf_events-methodBrief summary of 'SimInf_events'
show-SimInf_model-methodBrief summary of 'SimInf_model'
SimInfA Framework for Data-Driven Stochastic Disease Spread...
SimInf_eventsCreate a 'SimInf_events' object
SimInf_events-classClass '"SimInf_events"'
SimInf_modelCreate a 'SimInf_model'
SimInf_model-classClass '"SimInf_model"'
SIRCreate an SIR model
SIR-classDefinition of the SIR model
SISeCreate a SISe model
SISe3Create a 'SISe3' model
SISe3-classDefinition of the 'SISe3' model
SISe3_spCreate a SISe3_sp model
SISe3_sp-classDefinition of the 'SISe3_sp' model
SISe-classDefinition of the 'SISe' model
SISe_spCreate a 'SISe_sp' model
SISe_sp-classDefinition of the 'SISe_sp' model
summary-SimInf_events-methodDetailed summary of a 'SimInf_events' object
summary-SimInf_model-methodDetailed summary of a 'SimInf_model' object
trajectoryExtract data from a simulated trajectory
u0_SEIRExample data to initialize the 'SEIR' model
u0_SIRExample data to initialize the 'SIR' model
u0_SISeExample data to initialize the 'SISe' model
u0_SISe3Example data to initialize the 'SISe3' model
U-setSet a template for where to write the U result matrix
V-setSet a template for where to write the V result matrix
SimInf documentation built on April 21, 2018, 1:04 a.m.