API for SimInf
A Framework for Data-Driven Stochastic Disease Spread Simulations

Global functions
.onUnload Source code
C_R_init Source code
C_calldef Source code
C_code Man page Source code
C_code_mparse Source code
C_define Source code
C_heading Source code
C_include Source code
C_ptsFun Source code
C_run Source code
C_trFun Source code
G_label Source code
G_rownames Source code
Nc Source code
Nd Source code
SEIR Man page Source code
SEIR-class Man page
SIR Man page Source code
SIR-class Man page
SISe Man page Source code
SISe-class Man page
SISe3 Man page Source code
SISe3-class Man page
SISe3_sp Man page Source code
SISe3_sp-class Man page
SISe_sp Man page Source code
SISe_sp-class Man page
SimInf Man page
SimInf_events Man page Source code
SimInf_events-class Man page
SimInf_model Man page Source code
SimInf_model-class Man page
as.data.frame.SimInf_events Man page Source code
as_t_matrix Source code
boxplot,SimInf_model-method Man page
calculate_prevalence Source code
check_N Source code
check_distance_matrix Source code
check_end_t_arg Source code
check_gdata_arg Source code
check_infectious_pressure_arg Source code
check_integer_arg Source code
check_ldata_arg Source code
check_matched_data Source code
check_model_argument Source code
check_node_index_argument Source code
check_package_name Source code
check_u0 Source code
compartments_has_lhs Source code
compile_model Source code
create_DESCRIPTION_file Source code
create_Makevars_files Source code
create_NAMESPACE_file Source code
create_model_C_file Source code
create_model_R_class Source code
create_model_R_file Source code
create_model_R_object Source code
create_model_R_object_E Source code
create_model_R_object_G Source code
create_model_R_object_N Source code
create_model_R_object_S Source code
create_model_R_object_function Source code
create_model_R_object_gdata Source code
create_model_R_object_ldata Source code
create_model_R_object_model Source code
create_model_R_object_roxygen Source code
create_model_R_object_u0 Source code
create_model_R_object_v0 Source code
create_model_R_timestamp Source code
create_model_class_man_file Source code
create_model_man_file Source code
create_model_run_fn Source code
create_model_run_man_file Source code
create_template Source code
define_dot Source code
degree Source code
dependency_graph Source code
distance_matrix Man page Source code
do_is_trajectory_empty Source code
do_parse_prior Source code
evaluate_condition Source code
events Man page Source code
events_SEIR Man page Source code
events_SIR Man page Source code
events_SISe Man page Source code
events_SISe3 Man page
gdata Man page Source code
gdata<- Man page
have_openmp Source code
indegree Man page Source code
init_C_code Source code
init_E Source code
init_data_matrix Source code
init_data_vector Source code
init_error Source code
init_events Source code
init_output_matrix Source code
init_plot_argv Source code
init_plot_color Source code
init_plot_line_type Source code
init_plot_node_index Source code
init_plot_prevalence_data Source code
init_plot_range Source code
init_plot_trajectory_data Source code
init_sparse_matrix Source code
init_tspan Source code
init_x0 Source code
is_wholenumber Source code
ldata Man page Source code
match_compartments Source code
model_dll_key Source code
mparse Man page Source code
n_nodes Man page
n_nodes,SimInf_model-method Man page
nodes Man page
outdegree Man page Source code
package_skeleton Man page Source code
pairs,SimInf_model-method Man page
parse_compartments Source code
parse_formula Source code
parse_formula_item Source code
parse_priors Source code
parse_transitions Source code
plot,SimInf_events-method Man page
plot,SimInf_model-method Man page
plot_SimInf_events Source code
plot_data Source code
prevalence Man page
prevalence,SimInf_model,formula-method Man page
print_title Source code
punchcard<- Man page
replace_dot Source code
rewrite_propensity Source code
run Man page
run,SEIR-method Man page
run,SIR-method Man page
run,SISe-method Man page
run,SISe3-method Man page
run,SISe3_sp-method Man page
run,SISe_sp-method Man page
run,SimInf_model-method Man page
select_compartments Source code
select_matrix Man page Source code
select_matrix<- Man page
set_num_threads Man page Source code
shift_matrix Man page Source code
shift_matrix<- Man page
show,SimInf_events-method Man page
show,SimInf_model-method Man page
state_change_matrix Source code
stop_if_combined_data Source code
sum_compartments Source code
summary,SimInf_events-method Man page
summary,SimInf_model-method Man page
summary_data_matrix Source code
summary_events Source code
summary_gdata Source code
summary_matrix Source code
summary_output_matrix Source code
summary_trajectory Source code
summary_transitions Source code
summary_vector Source code
tokens Source code
trajectory Man page
trajectory,SimInf_model-method Man page
trajectory_as_is Source code
trajectory_data Source code
transform_compartments Source code
u0_SEIR Man page Source code
u0_SIR Man page Source code
u0_SISe Man page Source code
u0_SISe3 Man page
valid_G Source code
valid_S Source code
valid_SimInf_events_object Source code
valid_SimInf_model_object Source code
valid_U Source code
valid_V Source code
valid_events Source code
valid_gdata Source code
valid_ldata Source code
valid_tspan Source code
valid_u0 Source code
valid_v0 Source code
variable_names Source code
SimInf documentation built on Oct. 23, 2020, 5:07 p.m.