Files in SimInf
A Framework for Data-Driven Stochastic Disease Spread Simulations

configure
MD5
NEWS.md README.md
NAMESPACE
configure.ac
DESCRIPTION
cleanup
R/density_ratio.R R/openmp.R R/print.R R/degree.R R/SimInf_events.R R/abc.R R/init.R R/SISe_sp.R R/punchcard.R R/SEIR.R R/classes.R R/distance.R R/n.R R/SISe3.R R/match_compartments.R R/valid.R R/SimInf_model.R R/plot.R R/SISe.R R/run.R R/SISe3_sp.R R/mparse.R R/abc_support.R R/package_skeleton.R
R/abc_support.R.in
R/SIR.R R/distributions.R R/trajectory.R R/check_arguments.R R/prevalence.R R/SimInf.R R/C-generator.R
src/Makevars.win
src/Makevars.ucrt
src/init.c
src/SimInf-win.def
src/SimInf.c
src/Makevars.in
src/misc/SimInf_abc.c
src/misc/SimInf_local_spread.c
src/misc/kvec.h
src/misc/binheap.h
src/misc/SimInf_arg.c
src/misc/SimInf_trajectory.c
src/misc/SimInf_ldata.c
src/misc/SimInf_forward_euler_linear_decay.c
src/misc/SimInf_openmp.h
src/misc/binheap.c
src/misc/SimInf_openmp.c
src/misc/SimInf_arg.h
src/models/SISe3.c
src/models/SISe_sp.c
src/models/SISe3_sp.c
src/models/SIR.c
src/models/SEIR.c
src/models/SISe.c
src/solvers/SimInf_solver.c
src/solvers/SimInf_solver.h
src/solvers/aem/SimInf_solver_aem.h
src/solvers/aem/SimInf_solver_aem.c
src/solvers/ssm/SimInf_solver_ssm.h
src/solvers/ssm/SimInf_solver_ssm.c
inst/CITATION
inst/include/SimInf.h
inst/doc/scheduled-events.Rmd
inst/doc/scheduled-events.html
inst/doc/scheduled-events.R
inst/doc/SimInf.Rnw
inst/doc/SimInf.pdf inst/doc/SimInf.R
build/vignette.rds
build/partial.rdb
tests/abc-ldata.R tests/SimInf_events.R tests/abc.R tests/SISe_sp.R tests/punchcard.R tests/SEIR.R tests/abc-gdata.R tests/SISe3.R tests/match_compartments.R tests/sample_select.R tests/SimInf_model.R tests/phi.R tests/SISe.R tests/SISe3_sp.R tests/mparse.R tests/solver_aem.R tests/package_skeleton.R tests/ldata_sp.R tests/SIR.R tests/distributions.R tests/measures.R tests/prevalence.R tests/SimInf.R tests/abc/abc-ldata.R tests/abc/abc-gdata.R tests/util/check.R vignettes/scheduled-events.Rmd
vignettes/SimInf.Rnw
vignettes/SimInf.bib
vignettes/img/predator-prey.png
vignettes/img/SISe_sp-prevalence.pdf vignettes/img/temporal-network.pdf vignettes/img/exit.pdf vignettes/img/external-shift.pdf vignettes/img/external.pdf vignettes/img/enter.pdf
vignettes/img/temporal-network.svg
vignettes/img/internal.pdf vignettes/img/overview.pdf vignettes/img/mparse-epicurve.pdf
data/events_SISe3.rda
data/u0_SISe3.rda
data/nodes.rda
tools/winlibs.R man/run.Rd man/SEIR.Rd man/as.data.frame.SimInf_abc.Rd man/SimInf.Rd man/summary-SimInf_events-method.Rd man/u0_SIR.Rd man/show-SimInf_events-method.Rd man/SISe-class.Rd man/trajectory.Rd man/SEIR-class.Rd man/SISe3_sp-class.Rd man/SIR-class.Rd man/mparse.Rd man/package_skeleton.Rd man/summary-SimInf_model-method.Rd man/SimInf_events-class.Rd man/SISe3-class.Rd man/distance_matrix.Rd man/nodes.Rd man/prevalence-SimInf_model-method.Rd man/SimInf_events.Rd man/events_SISe3.Rd man/as.data.frame.SimInf_events.Rd man/show-SimInf_model-method.Rd man/n_generations.Rd man/C_code.Rd man/SISe_sp-class.Rd man/u0_SISe.Rd man/SIR.Rd man/pairs-SimInf_model-method.Rd man/plot-SimInf_events-method.Rd man/select_matrix.Rd man/n_nodes.Rd man/u0_SISe3.Rd man/abc.Rd man/prevalence.Rd man/set_num_threads.Rd man/events_SEIR.Rd man/outdegree.Rd man/SISe3_sp.Rd man/gdata-set.Rd man/ldata.Rd man/show-SimInf_abc-method.Rd man/shift_matrix.Rd man/SISe3.Rd man/boxplot-SimInf_model-method.Rd man/SimInf_model-class.Rd man/events_SISe.Rd man/SimInf_model.Rd man/events_SIR.Rd man/indegree.Rd man/plot.Rd man/events.Rd man/select_matrix-set.Rd man/summary-SimInf_abc-method.Rd man/gdata.Rd man/SISe_sp.Rd man/u0_SEIR.Rd man/plot-SimInf_abc-method.Rd man/SISe.Rd man/punchcard-set.Rd man/shift_matrix-set.Rd man/continue.Rd man/SimInf_abc-class.Rd man/trajectory-SimInf_model-method.Rd man/examples/abc.R
man/macros/citations.Rd
SimInf documentation built on April 20, 2022, 9:06 a.m.