Files in SimInf
A Framework for Data-Driven Stochastic Disease Spread Simulations
configure
MD5
NEWS.md
README.md
NAMESPACE
configure.ac
DESCRIPTION
cleanup
R/density_ratio.R
R/openmp.R
R/SIS.R
R/pfilter.R
R/print.R
R/degree.R
R/SimInf_events.R
R/abc.R
R/init.R
R/SISe_sp.R
R/punchcard.R
R/SEIR.R
R/classes.R
R/distance.R
R/n.R
R/SISe3.R
R/match_compartments.R
R/valid.R
R/SimInf_model.R
R/plot.R
R/SISe.R
R/run.R
R/SISe3_sp.R
R/mparse.R
R/package_skeleton.R
R/u0.R
R/SIR.R
R/distributions.R
R/trajectory.R
R/check_arguments.R
R/prevalence.R
R/v0.R
R/SimInf.R
R/C-generator.R
src/Makevars.win
src/Makevars.ucrt
src/init.c
src/SimInf-win.def
src/SimInf.c
src/Makevars.in
src/misc/SimInf_abc.c
src/misc/SimInf_particle_filter.c
src/misc/SimInf_local_spread.c
src/misc/kvec.h
src/misc/binheap.h
src/misc/SimInf_arg.c
src/misc/SimInf_trajectory.c
src/misc/SimInf_distance_matrix.c
src/misc/SimInf_ldata.c
src/misc/SimInf_forward_euler_linear_decay.c
src/misc/SimInf_openmp.h
src/misc/binheap.c
src/misc/SimInf_openmp.c
src/misc/SimInf_clean_raw_events.c
src/misc/SimInf_arg.h
src/models/SISe3.c
src/models/SISe_sp.c
src/models/SISe3_sp.c
src/models/SIR.c
src/models/SEIR.c
src/models/SISe.c
src/models/SIS.c
src/solvers/SimInf_solver.c
src/solvers/SimInf_solver.h
src/solvers/aem/SimInf_solver_aem.h
src/solvers/aem/SimInf_solver_aem.c
src/solvers/ssm/SimInf_solver_ssm.h
src/solvers/ssm/SimInf_solver_ssm.c
inst/CITATION
inst/include/SimInf.h
inst/doc/scheduled-events.Rmd
inst/doc/scheduled-events.html
inst/doc/scheduled-events.R
inst/doc/SimInf.Rnw
inst/doc/SimInf.pdf
inst/doc/SimInf.R
build/vignette.rds
build/partial.rdb
tests/density_ratio.R
tests/abc-ldata.R
tests/SIS.R
tests/pfilter.R
tests/SimInf_events.R
tests/abc.R
tests/SISe_sp.R
tests/punchcard.R
tests/SEIR.R
tests/abc-gdata.R
tests/SISe3.R
tests/match_compartments.R
tests/sample_select.R
tests/SimInf_model.R
tests/phi.R
tests/SISe.R
tests/SISe3_sp.R
tests/mparse.R
tests/solver_aem.R
tests/package_skeleton.R
tests/ldata_sp.R
tests/u0.R
tests/SIR.R
tests/distributions.R
tests/measures.R
tests/prevalence.R
tests/v0.R
tests/SimInf.R
tests/clean_raw_events.R
tests/util/check.R
vignettes/scheduled-events.Rmd
vignettes/SimInf.Rnw
vignettes/SimInf.bib
vignettes/img/predator-prey.png
vignettes/img/SISe_sp-prevalence.pdf
vignettes/img/temporal-network.pdf
vignettes/img/exit.pdf
vignettes/img/external-shift.pdf
vignettes/img/external.pdf
vignettes/img/enter.pdf
vignettes/img/temporal-network.svg
vignettes/img/internal.pdf
vignettes/img/overview.pdf
vignettes/img/mparse-epicurve.pdf
data/events_SISe3.rda
data/u0_SISe3.rda
data/nodes.rda
tools/winlibs.R
man/run.Rd
man/SEIR.Rd
man/as.data.frame.SimInf_abc.Rd
man/SimInf.Rd
man/SimInf_pfilter-class.Rd
man/summary-SimInf_events-method.Rd
man/u0_SIS.Rd
man/u0_SIR.Rd
man/show-SimInf_events-method.Rd
man/SISe-class.Rd
man/trajectory.Rd
man/SEIR-class.Rd
man/SISe3_sp-class.Rd
man/SIR-class.Rd
man/mparse.Rd
man/logLik-SimInf_pfilter-method.Rd
man/package_skeleton.Rd
man/summary-SimInf_model-method.Rd
man/SimInf_events-class.Rd
man/SISe3-class.Rd
man/distance_matrix.Rd
man/nodes.Rd
man/prevalence-SimInf_model-method.Rd
man/SimInf_events.Rd
man/events_SISe3.Rd
man/as.data.frame.SimInf_events.Rd
man/SIS.Rd
man/u0.Rd
man/trajectory-SimInf_pfilter-method.Rd
man/show-SimInf_model-method.Rd
man/n_generations.Rd
man/C_code.Rd
man/SISe_sp-class.Rd
man/u0_SISe.Rd
man/v0-set.Rd
man/SIR.Rd
man/pairs-SimInf_model-method.Rd
man/plot-SimInf_events-method.Rd
man/select_matrix.Rd
man/n_nodes.Rd
man/u0_SISe3.Rd
man/abc.Rd
man/prevalence.Rd
man/set_num_threads.Rd
man/events_SEIR.Rd
man/SIS-class.Rd
man/outdegree.Rd
man/SISe3_sp.Rd
man/pfilter.Rd
man/gdata-set.Rd
man/ldata.Rd
man/show-SimInf_abc-method.Rd
man/shift_matrix.Rd
man/SISe3.Rd
man/boxplot-SimInf_model-method.Rd
man/SimInf_model-class.Rd
man/events_SISe.Rd
man/SimInf_model.Rd
man/events_SIR.Rd
man/indegree.Rd
man/show-SimInf_pfilter-method.Rd
man/plot.Rd
man/events.Rd
man/select_matrix-set.Rd
man/summary-SimInf_abc-method.Rd
man/gdata.Rd
man/plot-SimInf_pfilter-method.Rd
man/summary-SimInf_pfilter-method.Rd
man/SISe_sp.Rd
man/u0_SEIR.Rd
man/events_SIS.Rd
man/plot-SimInf_abc-method.Rd
man/SISe.Rd
man/punchcard-set.Rd
man/shift_matrix-set.Rd
man/continue.Rd
man/SimInf_abc-class.Rd
man/trajectory-SimInf_model-method.Rd
man/u0-set.Rd
man/examples/pfilter.R
man/examples/abc.R
man/macros/citations.Rd
