Files in SimRVSequences

Simulate Genetic Sequence Data for Pedigrees

README.md R/EXmuts.R R/sim_seqFunctions.R R/SNVdata_methods.R R/identifyPathwaySNVs.R R/EXhaps.R R/check_functions.R R/study_seq_methods.R R/choose_gameteFunctions.R R/hg_exons.R R/combine_exons.R R/sim_gameteFunctions.R R/marker_map_functions.R R/SlimFunctions.R R/utility_Functions.R R/hg_apopPath.R R/study_peds.R R/sim_StudySeqFunctions.R R/vcf_functions.R vignettes/SimRVSequences.Rmd man/sim_gameteInheritance.Rd man/sim_gameteFormation.Rd man/convert_CM_to_BP.Rd man/create_chrom_map.Rd man/reduce_to_events.Rd man/hg_apopPath.Rd man/load_1KG.Rd man/check_peds.Rd man/combine_identicalmutations.Rd man/combine_exons_by_chrom.Rd man/hg_exons.Rd man/check_ped.Rd man/find_no_cSNV_rows.Rd man/get_SMindex_by_person.Rd man/sim_haploidFormation.Rd man/is.SNVdata.Rd man/is_odd.Rd man/is.famStudy.Rd man/is_int.Rd man/summary.famStudy.Rd man/affected_allele_count.Rd man/read_slim.Rd man/create_slimMap.Rd man/reMap_mutations.Rd man/sim_RVstudy.Rd man/study_peds.Rd man/reconstruct_fromHaplotype.Rd man/combine_exons.Rd man/affected_onlyPed.Rd man/check_SNV_map.Rd man/sim_seq.Rd man/EXhaps.Rd man/genos2sparseMatrix.Rd man/get_parOffInfo.Rd man/identify_pathwayRVs_byChrom.Rd man/assign_gen.Rd man/convert_BP_to_cM.Rd man/SNVdata.Rd man/identify_pathwaySNVs.Rd man/famStudy.Rd man/sim_chiasmataPositions.Rd man/remove_allWild.Rd man/condition_haplos_no_cSNV.Rd man/EXmuts.Rd man/resample.Rd man/sim_FGenos.Rd man/extract_tempIDs.Rd tests/testthat.R tests/testthat/test_sim_haploidFormation.R tests/testthat/test_sim_gameteInheritance.R tests/testthat/test_reMap_mutations.R tests/testthat/test_reduce_to_events.R tests/testthat/test_assign_gen.R tests/testthat/test_remove_allWild.R tests/testthat/test_sim_gameteFormation.R tests/testthat/test_affected_onlyPed.R tests/testthat/test_combine_identicalmutations.R tests/testthat/test_sim_chiasmataPositions.R tests/testthat/test_create_chrom_map.R tests/testthat/test_reconstruct_fromHaplotype.R tests/testthat/test_sim_RVstudy.R tests/testthat/test_ger_parOffInfo.R inst/doc/SimRVSequences.R inst/doc/SimRVSequences.Rmd