Markers_filter_PanglaoDB: Create Marker_list from the PanglaoDB database

In SlimR: Marker-Based Package for Single-Cell and Spatial-Transcriptomic Annotation

Create Marker_list from the PanglaoDB database

Description

Create Marker_list from the PanglaoDB database

Usage

Markers_filter_PanglaoDB(df, species_input, organ_input)

Arguments

df	Standardized PanglaoDB database. It is read as data(PanglaoDB) in the SlimR library.
species_input	Species information in PanglaoDB database. The default input is "Human" or "Mouse".The input can be retrieved by "PanglaoDB_table". For more information,please refer to https://panglaodb.se/ on PanglaoDB's official website.
organ_input	Organ type information in the PanglaoDB database. The input can be retrieved by "PanglaoDB_table".For more information, please refer to https://panglaodb.se/ on PanglaoDB's official website.

Value

The standardized "Marker_list" in the SlimR package

See Also

Other Standardized_Marker_list_Input: Markers_filter_Cellmarker2(), Read_excel_markers(), Read_seurat_markers()

Examples

PanglaoDB <- SlimR::PanglaoDB
Markers_list_panglaoDB <- Markers_filter_PanglaoDB(
    PanglaoDB,
    species_input = 'Human',
    organ_input = 'GI tract'
    )

SlimR documentation built on Aug. 19, 2025, 1:13 a.m.