calculate_expression: Counts average expression of gene set (Use in package)

In SlimR: Marker-Based Package for Single-Cell and Spatial-Transcriptomic Annotation

Counts average expression of gene set (Use in package)

Description

Counts average expression of gene set (Use in package)

Usage

calculate_expression(
  object,
  features,
  assay = NULL,
  cluster_col = NULL,
  colour_low = "white",
  colour_high = "navy"
)

Arguments

object	Enter a Seurat object.
features	Enter one or a set of markers.
assay	Enter the assay used by the Seurat object, such as "RNA". Default parameters use "assay = NULL".
cluster_col	Enter the meta.data column in the Seurat object to be annotated, such as "seurat_cluster". Default parameters use "cluster_col = NULL".
colour_low	Color for lowest expression level. (default = "white")
colour_high	Color for highest expression level. (default = "black")

Value

Average expression genes and relatied informations in the input "Seurat" object given "cluster_col" and given "features".

See Also

Other Use_in_packages: calculate_probability()

SlimR documentation built on Aug. 19, 2025, 1:13 a.m.