Read_excel_markers: Create "Marker_list" from Excel files ".xlsx"

In SlimR: Machine Learning-Assisted, Marker-Based Tool for Single-Cell and Spatial Transcriptomics Annotation

Create "Marker_list" from Excel files ".xlsx"

Description

Create "Marker_list" from Excel files ".xlsx"

Usage

Read_excel_markers(path, has_colnames = TRUE)

Arguments

path	The path information of Marker files stored in ".xlsx" format. The Sheet name in the file is filled with cell type. The first line of each Sheet is the table head, the first column is filled with markers information, and the following column is filled with mertic information.
has_colnames	Logical value indicating whether the first row contains column names. If FALSE, the first column will be named "Markers" and subsequent columns will be named "Col1", "Col2", etc.

Value

The standardized "Marker_list" in the SlimR package.

See Also

Other Section_2_Standardized_Markers_List: Markers_filter_Cellmarker2(), Markers_filter_PanglaoDB(), Read_seurat_markers()

Examples

## Not run: 
Markers_list_Excel <- Read_excel_markers(
    "D:/Laboratory/Marker_load.xlsx"
    )

## End(Not run)

SlimR documentation built on Dec. 17, 2025, 5:09 p.m.