StrainRanking: Ranking of pathogen strains

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Regression-based ranking of pathogen strains with respect to their contributions to natural epidemics, using demographic and genetic data sampled in the curse of the epidemics

Author
Soubeyrand, S., Tollenaere, C., Haon-Lasportes, E. and Laine, A.-L.
Date of publication
2014-02-05 16:46:26
Maintainer
Samuel Soubeyrand <samuel.soubeyrand@avignon.inra.fr>
License
GPL (>= 2.0)
Version
1.1

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Man pages

DGobj-class
Class '"DGobj"'
DGobj.rawdata
Construction of a DG object from raw data
DGobj.simul.mechanistic
Simulation of a DG object under a mechanistic model
DGobj.simul.regression
Simulation of a DG object under a regression model
generation.alpha.3strains
Generation of parameters for the simulations under the...
powderymildew
Demographic and genetic real data
ranking.strains
Method for ranking pathogen strains
StrainRanking-package
Package for ranking pathogen strains

Files in this package

StrainRanking
StrainRanking/NAMESPACE
StrainRanking/data
StrainRanking/data/powderymildew.RData
StrainRanking/R
StrainRanking/R/DGobj.rawData.R
StrainRanking/R/DGobj.simulRegression.R
StrainRanking/R/DGobj.simulMechanistic.R
StrainRanking/R/functions.R
StrainRanking/R/rankingStrains.R
StrainRanking/R/DGobj.R
StrainRanking/MD5
StrainRanking/DESCRIPTION
StrainRanking/man
StrainRanking/man/DGobj-class.Rd
StrainRanking/man/powderymildew.Rd
StrainRanking/man/DGobj.simul.mechanistic.Rd
StrainRanking/man/ranking.strains.Rd
StrainRanking/man/generation.alpha.3strains.Rd
StrainRanking/man/DGobj.simul.regression.Rd
StrainRanking/man/StrainRanking-package.Rd
StrainRanking/man/DGobj.rawdata.Rd