PathogenCompositionMoryzaeChina: Compositions of Magnaporthe oryzae collected in China

In StrainRanking: Ranking of Pathogen Strains

Description

Compositions of Magnaporthe oryzae formed from samples collected in Youle, Yunnan Province, China, in August 2008 and September 2009 (Saleh et al., 2014).

Usage

data(PathogenCompositionMoryzaeChina)

Format

A data frame with two rows, each row providing the pathogen composition (PC) at a given date (1st row: PC collected in August 2008; 2nd row: PC collected in September 2008).

References

Saleh D, Milazzo J, Adreit H, Fournier E, Tharreau D (2014). South-East Asia is the center of origin, diversity and dispersion of the rice blast fungus, Magnaporthe oryzae. New Phytologist 201: 1440-1456.

Soubeyrand S, Garreta V, Monteil C, Suffert F, Goyeau H, Berder J, Moinard J, Fournier E, Tharreau D, Morris C, Sache I (2017). Testing differences between pathogen compositions with small samples and sparse data. Phytopathology 107: 1199-1208. http://doi.org/10.1094/PHYTO-02-17-0070-FI

See Also

PathogenCompositionMoryzaeMadagascar

Examples

## Load Pathogen Compositions of M. oryzae collected in China
data(PathogenCompositionMoryzaeChina)

## Size of the first sample
sum(PathogenCompositionMoryzaeChina[1,])

## Size of the second sample
sum(PathogenCompositionMoryzaeChina[2,])

## Total number of different variants
ncol(PathogenCompositionMoryzaeChina)

## Display pathogen compositions
x=PathogenCompositionMoryzaeChina
barplot(t(x), col=rainbow(ncol(x)), main="M. oryzae - China")

StrainRanking documentation built on May 2, 2019, 3:38 p.m.