PathogenCompositionPtriticinaGalibier: Compositions of Puccinia triticina in Galibier crops

In StrainRanking: Ranking of Pathogen Strains

Description

Compositions of Puccinia triticina formed from samples collected in Lomagne, South-West France, from 2007 to 2013 (Soubeyrand et al., 2017).

Usage

data(PathogenCompositionPtriticinaGalibier)

Format

A data frame with 28 rows, each row providing the pathogen composition (PC) at a given date in years 2007-2013. The dates are provided in Soubeyrand et al. (2017).

References

Soubeyrand S, Garreta V, Monteil C, Suffert F, Goyeau H, Berder J, Moinard J, Fournier E, Tharreau D, Morris C, Sache I (2017). Testing differences between pathogen compositions with small samples and sparse data. Phytopathology 107: 1199-1208. http://doi.org/10.1094/PHYTO-02-17-0070-FI

See Also

PathogenCompositionPtriticinaKalango

Examples

## Load Pathogen Compositions of P. triticina in Galibier crops
data(PathogenCompositionPtriticinaGalibier)

## Size of the first sample
sum(PathogenCompositionPtriticinaGalibier[1,])

## Total number of different variants
ncol(PathogenCompositionPtriticinaGalibier)

## Display pathogen compositions
x=PathogenCompositionPtriticinaGalibier
barplot(t(x), col=rainbow(ncol(x)), las=2, main="P. triticina - Galibier")

StrainRanking documentation built on May 2, 2019, 3:38 p.m.